Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35690

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35685 and BPHYT_RS35690 are separated by 12 nucleotidesBPHYT_RS35690 and BPHYT_RS35695 overlap by 4 nucleotides BPHYT_RS35685: BPHYT_RS35685 - RpiR family transcriptional regulator, at 3,597,966 to 3,598,829 _RS35685 BPHYT_RS35690: BPHYT_RS35690 - IclR family transcriptional regulator, at 3,598,842 to 3,599,729 _RS35690 BPHYT_RS35695: BPHYT_RS35695 - IclR family transcriptional regulator, at 3,599,726 to 3,600,613 _RS35695 Position (kb) 3598 3599 3600Strain fitness (log2 ratio) -2 -1 0 1at 3597.864 kb on + strandat 3597.865 kb on - strandat 3598.844 kb on - strandat 3599.243 kb on - strand, within BPHYT_RS35690at 3600.637 kb on + strandat 3600.638 kb on - strandat 3600.645 kb on + strandat 3600.646 kb on - strandat 3600.713 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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3,597,864 + -0.5
3,597,865 - +0.2
3,598,844 - -2.3
3,599,243 - BPHYT_RS35690 0.45 -0.1
3,600,637 + +0.3
3,600,638 - -0.1
3,600,645 + -0.5
3,600,646 - -0.3
3,600,713 - -0.5

Or see this region's nucleotide sequence