Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19800

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19790 and BPHYT_RS19795 overlap by 4 nucleotidesBPHYT_RS19795 and BPHYT_RS19800 overlap by 8 nucleotidesBPHYT_RS19800 and BPHYT_RS19805 overlap by 4 nucleotidesBPHYT_RS19805 and BPHYT_RS19810 are separated by 63 nucleotides BPHYT_RS19790: BPHYT_RS19790 - peptidase M23, at 4,452,301 to 4,454,715 _RS19790 BPHYT_RS19795: BPHYT_RS19795 - chemotaxis protein CheW, at 4,454,712 to 4,455,392 _RS19795 BPHYT_RS19800: BPHYT_RS19800 - chemotaxis protein CheR, at 4,455,385 to 4,456,815 _RS19800 BPHYT_RS19805: BPHYT_RS19805 - chemotaxis protein CheW, at 4,456,812 to 4,457,276 _RS19805 BPHYT_RS19810: BPHYT_RS19810 - chemotaxis protein, at 4,457,340 to 4,458,965 _RS19810 Position (kb) 4455 4456 4457Strain fitness (log2 ratio) -1 0 1at 4455.030 kb on + strand, within BPHYT_RS19795at 4455.030 kb on + strand, within BPHYT_RS19795at 4455.031 kb on - strand, within BPHYT_RS19795at 4455.031 kb on - strand, within BPHYT_RS19795at 4455.031 kb on - strand, within BPHYT_RS19795at 4455.031 kb on - strand, within BPHYT_RS19795at 4455.031 kb on - strand, within BPHYT_RS19795at 4455.078 kb on - strand, within BPHYT_RS19795at 4455.078 kb on - strand, within BPHYT_RS19795at 4455.301 kb on - strand, within BPHYT_RS19795at 4455.301 kb on - strand, within BPHYT_RS19795at 4455.301 kb on - strand, within BPHYT_RS19795at 4455.301 kb on - strand, within BPHYT_RS19795at 4455.305 kb on - strand, within BPHYT_RS19795at 4455.512 kb on + strandat 4455.512 kb on + strandat 4455.513 kb on - strandat 4455.513 kb on - strandat 4455.584 kb on + strand, within BPHYT_RS19800at 4455.685 kb on + strand, within BPHYT_RS19800at 4455.685 kb on + strand, within BPHYT_RS19800at 4455.686 kb on - strand, within BPHYT_RS19800at 4455.782 kb on + strand, within BPHYT_RS19800at 4455.782 kb on + strand, within BPHYT_RS19800at 4455.783 kb on - strand, within BPHYT_RS19800at 4455.783 kb on - strand, within BPHYT_RS19800at 4455.967 kb on - strand, within BPHYT_RS19800at 4456.049 kb on - strand, within BPHYT_RS19800at 4456.149 kb on - strand, within BPHYT_RS19800at 4456.149 kb on - strand, within BPHYT_RS19800at 4456.445 kb on + strand, within BPHYT_RS19800at 4456.565 kb on + strand, within BPHYT_RS19800at 4456.565 kb on + strand, within BPHYT_RS19800at 4456.566 kb on - strand, within BPHYT_RS19800at 4456.922 kb on - strand, within BPHYT_RS19805at 4457.239 kb on + strandat 4457.427 kb on + strandat 4457.428 kb on - strandat 4457.698 kb on + strand, within BPHYT_RS19810at 4457.699 kb on - strand, within BPHYT_RS19810at 4457.699 kb on - strand, within BPHYT_RS19810at 4457.699 kb on - strand, within BPHYT_RS19810at 4457.699 kb on - strand, within BPHYT_RS19810

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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4,455,030 + BPHYT_RS19795 0.47 +0.7
4,455,030 + BPHYT_RS19795 0.47 +1.0
4,455,031 - BPHYT_RS19795 0.47 -0.7
4,455,031 - BPHYT_RS19795 0.47 -0.1
4,455,031 - BPHYT_RS19795 0.47 -0.2
4,455,031 - BPHYT_RS19795 0.47 -0.3
4,455,031 - BPHYT_RS19795 0.47 -0.1
4,455,078 - BPHYT_RS19795 0.54 -0.1
4,455,078 - BPHYT_RS19795 0.54 -0.1
4,455,301 - BPHYT_RS19795 0.86 +0.1
4,455,301 - BPHYT_RS19795 0.86 -0.3
4,455,301 - BPHYT_RS19795 0.86 -0.2
4,455,301 - BPHYT_RS19795 0.86 -0.8
4,455,305 - BPHYT_RS19795 0.87 -0.2
4,455,512 + -0.1
4,455,512 + +0.2
4,455,513 - +0.1
4,455,513 - -0.1
4,455,584 + BPHYT_RS19800 0.14 -0.7
4,455,685 + BPHYT_RS19800 0.21 +0.1
4,455,685 + BPHYT_RS19800 0.21 +0.4
4,455,686 - BPHYT_RS19800 0.21 +0.0
4,455,782 + BPHYT_RS19800 0.28 +0.2
4,455,782 + BPHYT_RS19800 0.28 +0.0
4,455,783 - BPHYT_RS19800 0.28 -0.1
4,455,783 - BPHYT_RS19800 0.28 -0.9
4,455,967 - BPHYT_RS19800 0.41 +0.2
4,456,049 - BPHYT_RS19800 0.46 -0.1
4,456,149 - BPHYT_RS19800 0.53 -0.1
4,456,149 - BPHYT_RS19800 0.53 -1.4
4,456,445 + BPHYT_RS19800 0.74 +0.3
4,456,565 + BPHYT_RS19800 0.82 +0.2
4,456,565 + BPHYT_RS19800 0.82 -0.0
4,456,566 - BPHYT_RS19800 0.83 -0.4
4,456,922 - BPHYT_RS19805 0.24 -0.0
4,457,239 + +0.7
4,457,427 + -1.3
4,457,428 - -0.2
4,457,698 + BPHYT_RS19810 0.22 -0.0
4,457,699 - BPHYT_RS19810 0.22 +0.0
4,457,699 - BPHYT_RS19810 0.22 +0.2
4,457,699 - BPHYT_RS19810 0.22 -0.2
4,457,699 - BPHYT_RS19810 0.22 -0.6

Or see this region's nucleotide sequence