Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS05090

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS05085 and ABIE51_RS05090 are separated by 72 nucleotidesABIE51_RS05090 and ABIE51_RS05095 are separated by 9 nucleotidesABIE51_RS05095 and ABIE51_RS05100 are separated by 17 nucleotides ABIE51_RS05085: ABIE51_RS05085 - Tol-Pal system beta propeller repeat protein TolB, at 1,099,382 to 1,100,698 _RS05085 ABIE51_RS05090: ABIE51_RS05090 - peptidoglycan-associated lipoprotein Pal, at 1,100,771 to 1,101,280 _RS05090 ABIE51_RS05095: ABIE51_RS05095 - tol-pal system protein YbgF, at 1,101,290 to 1,102,093 _RS05095 ABIE51_RS05100: ABIE51_RS05100 - 7-carboxy-7-deazaguanine synthase QueE, at 1,102,111 to 1,102,788 _RS05100 Position (kb) 1100 1101 1102Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1100.699 kb on + strandat 1100.699 kb on + strandat 1100.699 kb on + strandat 1100.700 kb on - strandat 1100.701 kb on + strandat 1100.701 kb on + strandat 1100.701 kb on + strandat 1100.701 kb on + strandat 1100.702 kb on - strandat 1100.714 kb on + strandat 1100.714 kb on + strandat 1100.714 kb on + strandat 1100.715 kb on - strandat 1100.715 kb on - strandat 1100.715 kb on - strandat 1100.718 kb on + strandat 1100.718 kb on + strandat 1100.718 kb on + strandat 1100.719 kb on - strandat 1100.719 kb on - strandat 1100.719 kb on - strandat 1100.719 kb on - strandat 1100.719 kb on - strandat 1100.719 kb on - strandat 1100.719 kb on - strandat 1100.719 kb on - strandat 1100.719 kb on - strandat 1100.719 kb on - strandat 1100.722 kb on + strandat 1100.722 kb on + strandat 1100.723 kb on - strandat 1100.723 kb on - strandat 1100.723 kb on - strandat 1100.723 kb on - strandat 1100.766 kb on + strandat 1100.766 kb on + strandat 1100.766 kb on + strandat 1101.278 kb on + strandat 1101.278 kb on + strandat 1101.278 kb on + strandat 1101.278 kb on + strandat 1101.279 kb on - strandat 1101.279 kb on - strandat 1101.279 kb on - strandat 1101.279 kb on - strandat 1101.281 kb on - strandat 1101.304 kb on - strandat 1101.304 kb on - strandat 1101.536 kb on + strand, within ABIE51_RS05095at 1101.556 kb on + strand, within ABIE51_RS05095at 1101.557 kb on - strand, within ABIE51_RS05095at 1101.557 kb on - strand, within ABIE51_RS05095at 1101.557 kb on - strand, within ABIE51_RS05095at 1101.557 kb on - strand, within ABIE51_RS05095at 1101.557 kb on - strand, within ABIE51_RS05095at 1101.557 kb on - strand, within ABIE51_RS05095at 1101.557 kb on - strand, within ABIE51_RS05095at 1101.557 kb on - strand, within ABIE51_RS05095at 1101.557 kb on - strand, within ABIE51_RS05095at 1101.674 kb on + strand, within ABIE51_RS05095at 1101.675 kb on - strand, within ABIE51_RS05095at 1101.722 kb on + strand, within ABIE51_RS05095at 1101.722 kb on + strand, within ABIE51_RS05095at 1101.723 kb on - strand, within ABIE51_RS05095at 1101.758 kb on + strand, within ABIE51_RS05095at 1101.758 kb on + strand, within ABIE51_RS05095at 1101.759 kb on - strand, within ABIE51_RS05095at 1101.815 kb on + strand, within ABIE51_RS05095at 1101.815 kb on + strand, within ABIE51_RS05095at 1101.815 kb on + strand, within ABIE51_RS05095at 1101.816 kb on - strand, within ABIE51_RS05095at 1101.816 kb on - strand, within ABIE51_RS05095at 1101.816 kb on - strand, within ABIE51_RS05095at 1101.833 kb on + strand, within ABIE51_RS05095at 1101.834 kb on - strand, within ABIE51_RS05095at 1101.834 kb on - strand, within ABIE51_RS05095at 1101.834 kb on - strand, within ABIE51_RS05095at 1101.851 kb on + strand, within ABIE51_RS05095at 1101.851 kb on + strand, within ABIE51_RS05095at 1101.854 kb on + strand, within ABIE51_RS05095at 1101.854 kb on + strand, within ABIE51_RS05095at 1101.854 kb on + strand, within ABIE51_RS05095at 1101.854 kb on + strand, within ABIE51_RS05095at 1101.855 kb on - strand, within ABIE51_RS05095at 1101.855 kb on - strand, within ABIE51_RS05095at 1101.855 kb on - strand, within ABIE51_RS05095at 1101.855 kb on - strand, within ABIE51_RS05095at 1101.855 kb on - strand, within ABIE51_RS05095at 1101.855 kb on - strand, within ABIE51_RS05095at 1101.855 kb on - strand, within ABIE51_RS05095at 1101.869 kb on + strand, within ABIE51_RS05095at 1101.869 kb on + strand, within ABIE51_RS05095at 1101.869 kb on + strand, within ABIE51_RS05095at 1101.870 kb on - strand, within ABIE51_RS05095at 1101.870 kb on - strand, within ABIE51_RS05095at 1101.870 kb on - strand, within ABIE51_RS05095at 1101.870 kb on - strand, within ABIE51_RS05095at 1101.967 kb on - strand, within ABIE51_RS05095at 1102.258 kb on + strand, within ABIE51_RS05100at 1102.258 kb on + strand, within ABIE51_RS05100at 1102.258 kb on + strand, within ABIE51_RS05100at 1102.259 kb on - strand, within ABIE51_RS05100at 1102.273 kb on + strand, within ABIE51_RS05100at 1102.274 kb on - strand, within ABIE51_RS05100at 1102.274 kb on - strand, within ABIE51_RS05100

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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1,100,699 + +0.3
1,100,699 + -0.1
1,100,699 + +1.0
1,100,700 - -2.0
1,100,701 + -0.5
1,100,701 + +0.0
1,100,701 + -0.9
1,100,701 + +0.1
1,100,702 - -0.3
1,100,714 + +0.0
1,100,714 + +0.2
1,100,714 + +0.8
1,100,715 - -0.6
1,100,715 - -0.5
1,100,715 - -0.4
1,100,718 + -0.3
1,100,718 + +1.0
1,100,718 + -0.1
1,100,719 - -0.3
1,100,719 - +0.5
1,100,719 - -0.4
1,100,719 - -0.3
1,100,719 - +0.1
1,100,719 - -1.2
1,100,719 - -0.1
1,100,719 - -0.1
1,100,719 - -1.1
1,100,719 - -1.1
1,100,722 + -0.0
1,100,722 + -0.3
1,100,723 - -0.8
1,100,723 - -0.7
1,100,723 - -0.7
1,100,723 - +0.1
1,100,766 + +0.3
1,100,766 + -0.4
1,100,766 + -0.4
1,101,278 + +0.2
1,101,278 + +0.2
1,101,278 + +0.2
1,101,278 + -0.1
1,101,279 - -0.5
1,101,279 - -0.5
1,101,279 - -0.0
1,101,279 - +0.4
1,101,281 - +1.0
1,101,304 - -0.1
1,101,304 - +0.2
1,101,536 + ABIE51_RS05095 0.31 +0.5
1,101,556 + ABIE51_RS05095 0.33 +0.6
1,101,557 - ABIE51_RS05095 0.33 +3.4
1,101,557 - ABIE51_RS05095 0.33 +0.7
1,101,557 - ABIE51_RS05095 0.33 +0.2
1,101,557 - ABIE51_RS05095 0.33 -0.4
1,101,557 - ABIE51_RS05095 0.33 -0.7
1,101,557 - ABIE51_RS05095 0.33 +0.1
1,101,557 - ABIE51_RS05095 0.33 +0.6
1,101,557 - ABIE51_RS05095 0.33 -0.3
1,101,557 - ABIE51_RS05095 0.33 -0.6
1,101,674 + ABIE51_RS05095 0.48 -0.2
1,101,675 - ABIE51_RS05095 0.48 +0.2
1,101,722 + ABIE51_RS05095 0.54 -0.0
1,101,722 + ABIE51_RS05095 0.54 -0.2
1,101,723 - ABIE51_RS05095 0.54 +1.5
1,101,758 + ABIE51_RS05095 0.58 +0.1
1,101,758 + ABIE51_RS05095 0.58 -0.1
1,101,759 - ABIE51_RS05095 0.58 +0.4
1,101,815 + ABIE51_RS05095 0.65 +1.0
1,101,815 + ABIE51_RS05095 0.65 -0.2
1,101,815 + ABIE51_RS05095 0.65 -1.4
1,101,816 - ABIE51_RS05095 0.65 -0.1
1,101,816 - ABIE51_RS05095 0.65 +0.4
1,101,816 - ABIE51_RS05095 0.65 -0.6
1,101,833 + ABIE51_RS05095 0.68 -0.4
1,101,834 - ABIE51_RS05095 0.68 +0.8
1,101,834 - ABIE51_RS05095 0.68 -0.6
1,101,834 - ABIE51_RS05095 0.68 -0.0
1,101,851 + ABIE51_RS05095 0.70 -0.8
1,101,851 + ABIE51_RS05095 0.70 -0.1
1,101,854 + ABIE51_RS05095 0.70 -0.0
1,101,854 + ABIE51_RS05095 0.70 -0.1
1,101,854 + ABIE51_RS05095 0.70 -0.9
1,101,854 + ABIE51_RS05095 0.70 -0.1
1,101,855 - ABIE51_RS05095 0.70 -0.6
1,101,855 - ABIE51_RS05095 0.70 -0.2
1,101,855 - ABIE51_RS05095 0.70 +0.6
1,101,855 - ABIE51_RS05095 0.70 +0.7
1,101,855 - ABIE51_RS05095 0.70 +0.2
1,101,855 - ABIE51_RS05095 0.70 -0.4
1,101,855 - ABIE51_RS05095 0.70 -0.1
1,101,869 + ABIE51_RS05095 0.72 +0.1
1,101,869 + ABIE51_RS05095 0.72 +0.0
1,101,869 + ABIE51_RS05095 0.72 +0.6
1,101,870 - ABIE51_RS05095 0.72 +0.0
1,101,870 - ABIE51_RS05095 0.72 +0.3
1,101,870 - ABIE51_RS05095 0.72 +0.8
1,101,870 - ABIE51_RS05095 0.72 +0.2
1,101,967 - ABIE51_RS05095 0.84 -0.5
1,102,258 + ABIE51_RS05100 0.22 -0.7
1,102,258 + ABIE51_RS05100 0.22 -0.1
1,102,258 + ABIE51_RS05100 0.22 +0.7
1,102,259 - ABIE51_RS05100 0.22 -1.6
1,102,273 + ABIE51_RS05100 0.24 -0.7
1,102,274 - ABIE51_RS05100 0.24 +0.7
1,102,274 - ABIE51_RS05100 0.24 -0.0

Or see this region's nucleotide sequence