Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04250 and SMc05007 are separated by 7 nucleotides SMc05007 and SMc04251 are separated by 135 nucleotides
SMc04250: SMc04250 - transposase, at 2,075,844 to 2,077,016
SMc04250
SMc05007: SMc05007 - hypothetical protein, at 2,077,024 to 2,077,230
SMc05007
SMc04251: SMc04251 - dctP-like component of a pyruvate transporter (from data) , at 2,077,366 to 2,078,472
SMc04251
Position (kb)
2077
2078 Strain fitness (log2 ratio)
-1
0
1
2 at 2077.014 kb on + strand at 2077.298 kb on + strand at 2077.298 kb on + strand at 2077.410 kb on - strand at 2077.515 kb on - strand, within SMc04251 at 2077.620 kb on - strand, within SMc04251 at 2077.620 kb on - strand, within SMc04251 at 2077.624 kb on + strand, within SMc04251 at 2077.626 kb on - strand, within SMc04251 at 2077.626 kb on - strand, within SMc04251 at 2077.626 kb on - strand, within SMc04251 at 2077.626 kb on - strand, within SMc04251 at 2077.626 kb on - strand, within SMc04251 at 2077.626 kb on - strand, within SMc04251 at 2077.682 kb on + strand, within SMc04251 at 2077.682 kb on + strand, within SMc04251 at 2077.683 kb on - strand, within SMc04251 at 2077.683 kb on - strand, within SMc04251 at 2077.683 kb on - strand at 2077.760 kb on + strand, within SMc04251 at 2077.760 kb on + strand, within SMc04251 at 2077.763 kb on + strand, within SMc04251 at 2077.763 kb on + strand, within SMc04251 at 2077.763 kb on + strand, within SMc04251 at 2077.764 kb on - strand at 2077.766 kb on + strand, within SMc04251 at 2077.766 kb on + strand, within SMc04251 at 2077.766 kb on + strand, within SMc04251 at 2077.766 kb on + strand, within SMc04251 at 2077.766 kb on + strand, within SMc04251 at 2077.767 kb on - strand, within SMc04251 at 2077.767 kb on - strand, within SMc04251 at 2077.769 kb on + strand, within SMc04251 at 2077.770 kb on - strand, within SMc04251 at 2077.770 kb on - strand, within SMc04251 at 2077.784 kb on + strand, within SMc04251 at 2077.784 kb on + strand, within SMc04251 at 2077.808 kb on + strand, within SMc04251 at 2077.860 kb on - strand, within SMc04251 at 2078.163 kb on - strand, within SMc04251 at 2078.163 kb on - strand, within SMc04251 at 2078.169 kb on - strand, within SMc04251 at 2078.169 kb on - strand, within SMc04251
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 2,077,014 + +0.3 2,077,298 + -0.2 2,077,298 + -0.4 2,077,410 - +0.2 2,077,515 - SMc04251 0.13 +0.7 2,077,620 - SMc04251 0.23 +1.2 2,077,620 - SMc04251 0.23 +0.2 2,077,624 + SMc04251 0.23 +0.5 2,077,626 - SMc04251 0.23 +1.1 2,077,626 - SMc04251 0.23 +1.1 2,077,626 - SMc04251 0.23 +1.8 2,077,626 - SMc04251 0.23 +2.2 2,077,626 - SMc04251 0.23 +0.0 2,077,626 - SMc04251 0.23 +1.0 2,077,682 + SMc04251 0.29 +1.1 2,077,682 + SMc04251 0.29 +0.9 2,077,683 - SMc04251 0.29 +1.0 2,077,683 - SMc04251 0.29 +1.0 2,077,683 - +0.4 2,077,760 + SMc04251 0.36 +1.2 2,077,760 + SMc04251 0.36 +0.8 2,077,763 + SMc04251 0.36 +0.4 2,077,763 + SMc04251 0.36 +0.8 2,077,763 + SMc04251 0.36 +0.9 2,077,764 - +2.2 2,077,766 + SMc04251 0.36 +1.2 2,077,766 + SMc04251 0.36 +1.3 2,077,766 + SMc04251 0.36 +1.1 2,077,766 + SMc04251 0.36 +1.2 2,077,766 + SMc04251 0.36 +0.1 2,077,767 - SMc04251 0.36 +1.7 2,077,767 - SMc04251 0.36 +0.9 2,077,769 + SMc04251 0.36 +1.9 2,077,770 - SMc04251 0.36 +1.1 2,077,770 - SMc04251 0.36 +1.2 2,077,784 + SMc04251 0.38 +1.2 2,077,784 + SMc04251 0.38 +0.7 2,077,808 + SMc04251 0.40 +1.1 2,077,860 - SMc04251 0.45 +1.2 2,078,163 - SMc04251 0.72 +1.3 2,078,163 - SMc04251 0.72 +0.6 2,078,169 - SMc04251 0.73 +1.3 2,078,169 - SMc04251 0.73 +0.9
Or see this region's nucleotide sequence