Strain Fitness in Sinorhizobium meliloti 1021 around SMc05007

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04250 and SMc05007 are separated by 7 nucleotidesSMc05007 and SMc04251 are separated by 135 nucleotides SMc04250: SMc04250 - transposase, at 2,075,844 to 2,077,016 SMc04250 SMc05007: SMc05007 - hypothetical protein, at 2,077,024 to 2,077,230 SMc05007 SMc04251: SMc04251 - dctP-like component of a pyruvate transporter (from data), at 2,077,366 to 2,078,472 SMc04251 Position (kb) 2077 2078Strain fitness (log2 ratio) -1 0 1 2at 2077.014 kb on + strandat 2077.298 kb on + strandat 2077.298 kb on + strandat 2077.410 kb on - strandat 2077.515 kb on - strand, within SMc04251at 2077.620 kb on - strand, within SMc04251at 2077.620 kb on - strand, within SMc04251at 2077.624 kb on + strand, within SMc04251at 2077.626 kb on - strand, within SMc04251at 2077.626 kb on - strand, within SMc04251at 2077.626 kb on - strand, within SMc04251at 2077.626 kb on - strand, within SMc04251at 2077.626 kb on - strand, within SMc04251at 2077.626 kb on - strand, within SMc04251at 2077.682 kb on + strand, within SMc04251at 2077.682 kb on + strand, within SMc04251at 2077.683 kb on - strand, within SMc04251at 2077.683 kb on - strand, within SMc04251at 2077.683 kb on - strandat 2077.760 kb on + strand, within SMc04251at 2077.760 kb on + strand, within SMc04251at 2077.763 kb on + strand, within SMc04251at 2077.763 kb on + strand, within SMc04251at 2077.763 kb on + strand, within SMc04251at 2077.764 kb on - strandat 2077.766 kb on + strand, within SMc04251at 2077.766 kb on + strand, within SMc04251at 2077.766 kb on + strand, within SMc04251at 2077.766 kb on + strand, within SMc04251at 2077.766 kb on + strand, within SMc04251at 2077.767 kb on - strand, within SMc04251at 2077.767 kb on - strand, within SMc04251at 2077.769 kb on + strand, within SMc04251at 2077.770 kb on - strand, within SMc04251at 2077.770 kb on - strand, within SMc04251at 2077.784 kb on + strand, within SMc04251at 2077.784 kb on + strand, within SMc04251at 2077.808 kb on + strand, within SMc04251at 2077.860 kb on - strand, within SMc04251at 2078.163 kb on - strand, within SMc04251at 2078.163 kb on - strand, within SMc04251at 2078.169 kb on - strand, within SMc04251at 2078.169 kb on - strand, within SMc04251

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,077,014 + +0.3
2,077,298 + -0.2
2,077,298 + -0.4
2,077,410 - +0.2
2,077,515 - SMc04251 0.13 +0.7
2,077,620 - SMc04251 0.23 +1.2
2,077,620 - SMc04251 0.23 +0.2
2,077,624 + SMc04251 0.23 +0.5
2,077,626 - SMc04251 0.23 +1.1
2,077,626 - SMc04251 0.23 +1.1
2,077,626 - SMc04251 0.23 +1.8
2,077,626 - SMc04251 0.23 +2.2
2,077,626 - SMc04251 0.23 +0.0
2,077,626 - SMc04251 0.23 +1.0
2,077,682 + SMc04251 0.29 +1.1
2,077,682 + SMc04251 0.29 +0.9
2,077,683 - SMc04251 0.29 +1.0
2,077,683 - SMc04251 0.29 +1.0
2,077,683 - +0.4
2,077,760 + SMc04251 0.36 +1.2
2,077,760 + SMc04251 0.36 +0.8
2,077,763 + SMc04251 0.36 +0.4
2,077,763 + SMc04251 0.36 +0.8
2,077,763 + SMc04251 0.36 +0.9
2,077,764 - +2.2
2,077,766 + SMc04251 0.36 +1.2
2,077,766 + SMc04251 0.36 +1.3
2,077,766 + SMc04251 0.36 +1.1
2,077,766 + SMc04251 0.36 +1.2
2,077,766 + SMc04251 0.36 +0.1
2,077,767 - SMc04251 0.36 +1.7
2,077,767 - SMc04251 0.36 +0.9
2,077,769 + SMc04251 0.36 +1.9
2,077,770 - SMc04251 0.36 +1.1
2,077,770 - SMc04251 0.36 +1.2
2,077,784 + SMc04251 0.38 +1.2
2,077,784 + SMc04251 0.38 +0.7
2,077,808 + SMc04251 0.40 +1.1
2,077,860 - SMc04251 0.45 +1.2
2,078,163 - SMc04251 0.72 +1.3
2,078,163 - SMc04251 0.72 +0.6
2,078,169 - SMc04251 0.73 +1.3
2,078,169 - SMc04251 0.73 +0.9

Or see this region's nucleotide sequence