Strain Fitness in Sinorhizobium meliloti 1021 around SMc02573

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02570 and SMc02572 are separated by 32 nucleotidesSMc02572 and SMc02573 overlap by 1 nucleotidesSMc02573 and SMc02574 are separated by 26 nucleotidesSMc02574 and SMc02575 are separated by 320 nucleotides SMc02570: SMc02570 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 58,682 to 59,425 SMc02570 SMc02572: SMc02572 - imidazole glycerol phosphate synthase subunit HisH, at 59,458 to 60,108 SMc02572 SMc02573: SMc02573 - hypothetical protein, at 60,108 to 60,581 SMc02573 SMc02574: SMc02574 - imidazoleglycerol-phosphate dehydratase, at 60,608 to 61,216 SMc02574 SMc02575: SMc02575 - ATP-dependent protease peptidase subunit, at 61,537 to 62,094 SMc02575 Position (kb) 60 61Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 59.343 kb on + strand, within SMc02570at 59.343 kb on + strand, within SMc02570at 59.344 kb on - strand, within SMc02570at 59.344 kb on - strand, within SMc02570at 59.627 kb on + strand, within SMc02572at 59.627 kb on + strand, within SMc02572at 59.628 kb on - strand, within SMc02572at 60.232 kb on + strand, within SMc02573at 60.233 kb on - strand, within SMc02573at 60.572 kb on - strandat 60.572 kb on - strandat 60.572 kb on - strandat 60.598 kb on - strandat 60.598 kb on - strandat 60.598 kb on - strandat 60.736 kb on - strand, within SMc02574at 60.736 kb on - strandat 60.927 kb on + strand, within SMc02574at 60.928 kb on - strand, within SMc02574at 61.084 kb on + strand, within SMc02574at 61.084 kb on + strand, within SMc02574at 61.085 kb on - strand, within SMc02574at 61.085 kb on - strand, within SMc02574at 61.085 kb on - strand, within SMc02574at 61.085 kb on - strand, within SMc02574at 61.264 kb on - strandat 61.348 kb on + strandat 61.348 kb on + strandat 61.349 kb on - strandat 61.368 kb on - strandat 61.466 kb on + strandat 61.467 kb on - strandat 61.467 kb on - strandat 61.470 kb on + strandat 61.471 kb on - strandat 61.471 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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59,343 + SMc02570 0.89 -6.4
59,343 + SMc02570 0.89 -1.9
59,344 - SMc02570 0.89 -2.8
59,344 - SMc02570 0.89 -4.0
59,627 + SMc02572 0.26 -4.9
59,627 + SMc02572 0.26 -6.0
59,628 - SMc02572 0.26 -4.5
60,232 + SMc02573 0.26 -3.3
60,233 - SMc02573 0.26 -0.3
60,572 - -0.7
60,572 - +0.8
60,572 - -1.6
60,598 - -1.8
60,598 - -0.3
60,598 - -0.9
60,736 - SMc02574 0.21 -0.6
60,736 - +0.4
60,927 + SMc02574 0.52 -1.4
60,928 - SMc02574 0.53 -0.2
61,084 + SMc02574 0.78 -5.2
61,084 + SMc02574 0.78 -2.8
61,085 - SMc02574 0.78 -1.6
61,085 - SMc02574 0.78 +0.7
61,085 - SMc02574 0.78 -0.6
61,085 - SMc02574 0.78 +0.5
61,264 - +0.2
61,348 + -0.3
61,348 + +0.1
61,349 - -0.1
61,368 - -0.2
61,466 + -0.2
61,467 - +0.0
61,467 - -0.6
61,470 + -0.2
61,471 - +0.1
61,471 - +0.1

Or see this region's nucleotide sequence