Strain Fitness in Sinorhizobium meliloti 1021 around SMc02487

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02488 and SMc02487 are separated by 205 nucleotidesSMc02487 and SMc02486 are separated by 36 nucleotidesSMc02486 and SMc02485 overlap by 4 nucleotides SMc02488: SMc02488 - hypothetical protein, at 3,306,832 to 3,307,908 SMc02488 SMc02487: SMc02487 - dihydrolipoamide dehydrogenase, at 3,308,114 to 3,309,520 SMc02487 SMc02486: SMc02486 - oxidoreductase, at 3,309,557 to 3,310,309 SMc02486 SMc02485: SMc02485 - signal peptide protein, at 3,310,306 to 3,310,806 SMc02485 Position (kb) 3308 3309 3310Strain fitness (log2 ratio) -2 -1 0 1at 3307.651 kb on + strand, within SMc02488at 3308.112 kb on - strandat 3309.598 kb on - strandat 3309.598 kb on - strandat 3309.622 kb on - strandat 3309.765 kb on - strand, within SMc02486at 3309.765 kb on - strand, within SMc02486at 3309.835 kb on - strand, within SMc02486at 3309.844 kb on - strand, within SMc02486at 3309.844 kb on - strand, within SMc02486at 3310.207 kb on - strand, within SMc02486at 3310.207 kb on - strand, within SMc02486at 3310.207 kb on - strand, within SMc02486at 3310.354 kb on - strandat 3310.354 kb on - strandat 3310.354 kb on - strandat 3310.482 kb on - strand, within SMc02485

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,307,651 + SMc02488 0.76 +0.8
3,308,112 - +0.1
3,309,598 - +0.2
3,309,598 - -0.2
3,309,622 - -0.2
3,309,765 - SMc02486 0.28 +0.4
3,309,765 - SMc02486 0.28 +0.4
3,309,835 - SMc02486 0.37 +0.1
3,309,844 - SMc02486 0.38 -0.2
3,309,844 - SMc02486 0.38 +0.2
3,310,207 - SMc02486 0.86 +0.0
3,310,207 - SMc02486 0.86 -1.3
3,310,207 - SMc02486 0.86 -1.6
3,310,354 - -0.5
3,310,354 - -2.4
3,310,354 - -0.2
3,310,482 - SMc02485 0.35 -0.7

Or see this region's nucleotide sequence