Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02181 and SMc02180 are separated by 186 nucleotides SMc02180 and SMc02179 are separated by 58 nucleotides SMc02179 and SMc02178 are separated by 111 nucleotides
SMc02181: SMc02181 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase, at 511,820 to 515,521
SMc02181
SMc02180: SMc02180 - hypothetical protein, at 515,708 to 516,022
SMc02180
SMc02179: SMc02179 - hypothetical protein, at 516,081 to 516,887
SMc02179
SMc02178: SMc02178 - hypothetical protein, at 516,999 to 517,460
SMc02178
Position (kb) 515
516
517 Strain fitness (log2 ratio) -2
-1
0
1
2 at 514.752 kb on + strand, within SMc02181 at 514.753 kb on - strand, within SMc02181 at 514.753 kb on - strand, within SMc02181 at 514.803 kb on + strand, within SMc02181 at 514.804 kb on - strand, within SMc02181 at 514.804 kb on - strand, within SMc02181 at 514.812 kb on + strand, within SMc02181 at 514.813 kb on - strand, within SMc02181 at 514.813 kb on - strand, within SMc02181 at 514.816 kb on - strand, within SMc02181 at 514.864 kb on - strand, within SMc02181 at 514.864 kb on - strand, within SMc02181 at 514.869 kb on + strand, within SMc02181 at 514.870 kb on - strand, within SMc02181 at 514.897 kb on + strand, within SMc02181 at 514.897 kb on + strand, within SMc02181 at 514.898 kb on - strand, within SMc02181 at 515.284 kb on + strand at 515.285 kb on - strand at 515.285 kb on - strand at 515.285 kb on - strand at 515.285 kb on - strand at 515.705 kb on - strand at 515.705 kb on - strand at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.792 kb on + strand, within SMc02180 at 515.793 kb on - strand, within SMc02180 at 515.793 kb on - strand, within SMc02180 at 515.892 kb on + strand, within SMc02180 at 515.892 kb on + strand at 515.892 kb on + strand, within SMc02180 at 515.892 kb on + strand, within SMc02180 at 515.893 kb on - strand, within SMc02180 at 515.893 kb on - strand, within SMc02180 at 515.893 kb on - strand, within SMc02180 at 516.033 kb on + strand at 516.108 kb on + strand at 516.108 kb on + strand at 516.109 kb on - strand at 516.109 kb on - strand at 516.109 kb on - strand at 516.166 kb on + strand, within SMc02179 at 516.218 kb on + strand, within SMc02179 at 516.219 kb on - strand, within SMc02179 at 516.219 kb on - strand, within SMc02179 at 516.309 kb on - strand, within SMc02179 at 516.343 kb on + strand, within SMc02179 at 516.344 kb on - strand, within SMc02179 at 516.344 kb on - strand, within SMc02179 at 516.344 kb on - strand, within SMc02179 at 516.344 kb on - strand, within SMc02179 at 516.374 kb on + strand, within SMc02179 at 516.375 kb on - strand, within SMc02179 at 516.399 kb on - strand, within SMc02179 at 516.486 kb on + strand, within SMc02179 at 516.486 kb on + strand, within SMc02179 at 516.486 kb on + strand, within SMc02179 at 516.486 kb on + strand, within SMc02179 at 516.518 kb on - strand, within SMc02179 at 516.537 kb on - strand, within SMc02179 at 516.783 kb on + strand, within SMc02179 at 516.784 kb on - strand, within SMc02179 at 516.784 kb on - strand, within SMc02179 at 516.784 kb on - strand, within SMc02179
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 514,752 + SMc02181 0.79 -0.1 514,753 - SMc02181 0.79 +0.0 514,753 - SMc02181 0.79 +0.5 514,803 + SMc02181 0.81 -0.6 514,804 - SMc02181 0.81 -0.1 514,804 - SMc02181 0.81 -1.0 514,812 + SMc02181 0.81 -1.2 514,813 - SMc02181 0.81 +0.2 514,813 - SMc02181 0.81 +0.0 514,816 - SMc02181 0.81 -0.6 514,864 - SMc02181 0.82 -0.0 514,864 - SMc02181 0.82 -0.2 514,869 + SMc02181 0.82 -0.2 514,870 - SMc02181 0.82 -0.4 514,897 + SMc02181 0.83 +0.4 514,897 + SMc02181 0.83 -0.2 514,898 - SMc02181 0.83 +0.2 515,284 + -0.0 515,285 - +0.0 515,285 - +2.0 515,285 - +0.1 515,285 - -0.2 515,705 - -0.1 515,705 - -0.1 515,792 + SMc02180 0.27 +1.0 515,792 + SMc02180 0.27 -0.1 515,792 + SMc02180 0.27 +0.6 515,792 + SMc02180 0.27 +0.5 515,792 + SMc02180 0.27 +0.3 515,792 + SMc02180 0.27 +0.9 515,793 - SMc02180 0.27 +0.9 515,793 - SMc02180 0.27 +0.1 515,892 + SMc02180 0.58 -0.2 515,892 + +1.0 515,892 + SMc02180 0.58 +0.3 515,892 + SMc02180 0.58 +0.2 515,893 - SMc02180 0.59 +0.1 515,893 - SMc02180 0.59 +0.5 515,893 - SMc02180 0.59 -1.3 516,033 + +0.7 516,108 + +0.2 516,108 + +0.2 516,109 - -0.7 516,109 - +0.8 516,109 - -0.7 516,166 + SMc02179 0.11 -0.0 516,218 + SMc02179 0.17 -2.6 516,219 - SMc02179 0.17 +0.4 516,219 - SMc02179 0.17 -0.4 516,309 - SMc02179 0.28 -0.1 516,343 + SMc02179 0.32 -0.7 516,344 - SMc02179 0.33 -0.1 516,344 - SMc02179 0.33 +0.2 516,344 - SMc02179 0.33 +0.1 516,344 - SMc02179 0.33 -0.8 516,374 + SMc02179 0.36 -0.4 516,375 - SMc02179 0.36 -0.0 516,399 - SMc02179 0.39 -0.0 516,486 + SMc02179 0.50 -0.2 516,486 + SMc02179 0.50 +0.1 516,486 + SMc02179 0.50 +0.2 516,486 + SMc02179 0.50 -0.0 516,518 - SMc02179 0.54 -0.4 516,537 - SMc02179 0.57 -0.6 516,783 + SMc02179 0.87 -0.0 516,784 - SMc02179 0.87 +0.4 516,784 - SMc02179 0.87 -0.2 516,784 - SMc02179 0.87 -0.3
Or see this region's nucleotide sequence