Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01359 and SMc01358 overlap by 19 nucleotides SMc01358 and SMc01357 are separated by 205 nucleotides SMc01357 and SMc01356 overlap by 4 nucleotides SMc01356 and SMc01355 overlap by 67 nucleotides
SMc01359: SMc01359 - oxidoreductase, at 1,424,056 to 1,425,708
SMc01359
SMc01358: SMc01358 - hypothetical protein, at 1,425,690 to 1,426,625
SMc01358
SMc01357: SMc01357 - hypothetical protein, at 1,426,831 to 1,426,986
SMc01357
SMc01356: SMc01356 - hypothetical protein, at 1,426,983 to 1,427,318
SMc01356
SMc01355: SMc01355 - Holliday junction resolvase-like protein, at 1,427,252 to 1,427,749
SMc01355
Position (kb)
1425
1426
1427 Strain fitness (log2 ratio)
-2
-1
0
1 at 1425.706 kb on + strand at 1425.707 kb on - strand at 1425.707 kb on - strand at 1425.733 kb on - strand at 1425.733 kb on - strand at 1426.067 kb on - strand, within SMc01358 at 1426.096 kb on - strand, within SMc01358 at 1426.096 kb on - strand, within SMc01358 at 1426.196 kb on + strand, within SMc01358 at 1426.197 kb on - strand, within SMc01358 at 1426.197 kb on - strand, within SMc01358 at 1426.197 kb on - strand, within SMc01358 at 1426.201 kb on + strand, within SMc01358 at 1426.201 kb on + strand, within SMc01358 at 1426.270 kb on - strand, within SMc01358 at 1426.334 kb on + strand, within SMc01358 at 1426.334 kb on + strand, within SMc01358 at 1426.335 kb on - strand, within SMc01358 at 1426.335 kb on - strand, within SMc01358 at 1426.335 kb on - strand, within SMc01358 at 1426.533 kb on + strand at 1426.673 kb on + strand at 1426.674 kb on - strand at 1426.742 kb on + strand at 1426.743 kb on - strand at 1426.761 kb on - strand at 1426.761 kb on - strand at 1426.889 kb on + strand, within SMc01357 at 1426.890 kb on - strand, within SMc01357 at 1426.953 kb on + strand, within SMc01357 at 1426.954 kb on - strand, within SMc01357 at 1427.027 kb on + strand, within SMc01356 at 1427.037 kb on + strand, within SMc01356 at 1427.049 kb on + strand, within SMc01356 at 1427.049 kb on + strand at 1427.049 kb on + strand, within SMc01356 at 1427.049 kb on + strand, within SMc01356 at 1427.049 kb on + strand, within SMc01356 at 1427.050 kb on - strand, within SMc01356 at 1427.050 kb on - strand, within SMc01356 at 1427.050 kb on - strand, within SMc01356 at 1427.052 kb on + strand, within SMc01356 at 1427.053 kb on - strand, within SMc01356 at 1427.053 kb on - strand, within SMc01356 at 1427.053 kb on - strand, within SMc01356 at 1427.116 kb on - strand, within SMc01356 at 1427.242 kb on - strand, within SMc01356 at 1427.303 kb on - strand at 1427.515 kb on + strand, within SMc01355
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,425,706 + -0.6 1,425,707 - -0.4 1,425,707 - +0.1 1,425,733 - -0.7 1,425,733 - +0.0 1,426,067 - SMc01358 0.40 -1.1 1,426,096 - SMc01358 0.43 -0.3 1,426,096 - SMc01358 0.43 -0.4 1,426,196 + SMc01358 0.54 +0.4 1,426,197 - SMc01358 0.54 +0.1 1,426,197 - SMc01358 0.54 -0.5 1,426,197 - SMc01358 0.54 +0.0 1,426,201 + SMc01358 0.55 -0.0 1,426,201 + SMc01358 0.55 -1.3 1,426,270 - SMc01358 0.62 -0.2 1,426,334 + SMc01358 0.69 +0.1 1,426,334 + SMc01358 0.69 -0.1 1,426,335 - SMc01358 0.69 +0.1 1,426,335 - SMc01358 0.69 +0.2 1,426,335 - SMc01358 0.69 +0.0 1,426,533 + +0.7 1,426,673 + +0.0 1,426,674 - +0.4 1,426,742 + -1.0 1,426,743 - +0.0 1,426,761 - +1.2 1,426,761 - +0.2 1,426,889 + SMc01357 0.37 -0.7 1,426,890 - SMc01357 0.38 +0.1 1,426,953 + SMc01357 0.78 -0.2 1,426,954 - SMc01357 0.79 -1.0 1,427,027 + SMc01356 0.13 -0.4 1,427,037 + SMc01356 0.16 -1.5 1,427,049 + SMc01356 0.20 -2.2 1,427,049 + +1.5 1,427,049 + SMc01356 0.20 -1.5 1,427,049 + SMc01356 0.20 -0.4 1,427,049 + SMc01356 0.20 -1.7 1,427,050 - SMc01356 0.20 -0.1 1,427,050 - SMc01356 0.20 -0.3 1,427,050 - SMc01356 0.20 -0.1 1,427,052 + SMc01356 0.21 -0.2 1,427,053 - SMc01356 0.21 +0.1 1,427,053 - SMc01356 0.21 -0.3 1,427,053 - SMc01356 0.21 -0.5 1,427,116 - SMc01356 0.40 +0.3 1,427,242 - SMc01356 0.77 +0.6 1,427,303 - -0.5 1,427,515 + SMc01355 0.53 -1.3
Or see this region's nucleotide sequence