Strain Fitness in Sinorhizobium meliloti 1021 around SMc01358

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01359 and SMc01358 overlap by 19 nucleotidesSMc01358 and SMc01357 are separated by 205 nucleotidesSMc01357 and SMc01356 overlap by 4 nucleotidesSMc01356 and SMc01355 overlap by 67 nucleotides SMc01359: SMc01359 - oxidoreductase, at 1,424,056 to 1,425,708 SMc01359 SMc01358: SMc01358 - hypothetical protein, at 1,425,690 to 1,426,625 SMc01358 SMc01357: SMc01357 - hypothetical protein, at 1,426,831 to 1,426,986 SMc01357 SMc01356: SMc01356 - hypothetical protein, at 1,426,983 to 1,427,318 SMc01356 SMc01355: SMc01355 - Holliday junction resolvase-like protein, at 1,427,252 to 1,427,749 SMc01355 Position (kb) 1425 1426 1427Strain fitness (log2 ratio) -2 -1 0 1at 1425.706 kb on + strandat 1425.707 kb on - strandat 1425.707 kb on - strandat 1425.733 kb on - strandat 1425.733 kb on - strandat 1426.067 kb on - strand, within SMc01358at 1426.096 kb on - strand, within SMc01358at 1426.096 kb on - strand, within SMc01358at 1426.196 kb on + strand, within SMc01358at 1426.197 kb on - strand, within SMc01358at 1426.197 kb on - strand, within SMc01358at 1426.197 kb on - strand, within SMc01358at 1426.201 kb on + strand, within SMc01358at 1426.201 kb on + strand, within SMc01358at 1426.270 kb on - strand, within SMc01358at 1426.334 kb on + strand, within SMc01358at 1426.334 kb on + strand, within SMc01358at 1426.335 kb on - strand, within SMc01358at 1426.335 kb on - strand, within SMc01358at 1426.335 kb on - strand, within SMc01358at 1426.533 kb on + strandat 1426.673 kb on + strandat 1426.674 kb on - strandat 1426.742 kb on + strandat 1426.743 kb on - strandat 1426.761 kb on - strandat 1426.761 kb on - strandat 1426.889 kb on + strand, within SMc01357at 1426.890 kb on - strand, within SMc01357at 1426.953 kb on + strand, within SMc01357at 1426.954 kb on - strand, within SMc01357at 1427.027 kb on + strand, within SMc01356at 1427.037 kb on + strand, within SMc01356at 1427.049 kb on + strand, within SMc01356at 1427.049 kb on + strandat 1427.049 kb on + strand, within SMc01356at 1427.049 kb on + strand, within SMc01356at 1427.049 kb on + strand, within SMc01356at 1427.050 kb on - strand, within SMc01356at 1427.050 kb on - strand, within SMc01356at 1427.050 kb on - strand, within SMc01356at 1427.052 kb on + strand, within SMc01356at 1427.053 kb on - strand, within SMc01356at 1427.053 kb on - strand, within SMc01356at 1427.053 kb on - strand, within SMc01356at 1427.116 kb on - strand, within SMc01356at 1427.242 kb on - strand, within SMc01356at 1427.303 kb on - strandat 1427.515 kb on + strand, within SMc01355

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,425,706 + -0.6
1,425,707 - -0.4
1,425,707 - +0.1
1,425,733 - -0.7
1,425,733 - +0.0
1,426,067 - SMc01358 0.40 -1.1
1,426,096 - SMc01358 0.43 -0.3
1,426,096 - SMc01358 0.43 -0.4
1,426,196 + SMc01358 0.54 +0.4
1,426,197 - SMc01358 0.54 +0.1
1,426,197 - SMc01358 0.54 -0.5
1,426,197 - SMc01358 0.54 +0.0
1,426,201 + SMc01358 0.55 -0.0
1,426,201 + SMc01358 0.55 -1.3
1,426,270 - SMc01358 0.62 -0.2
1,426,334 + SMc01358 0.69 +0.1
1,426,334 + SMc01358 0.69 -0.1
1,426,335 - SMc01358 0.69 +0.1
1,426,335 - SMc01358 0.69 +0.2
1,426,335 - SMc01358 0.69 +0.0
1,426,533 + +0.7
1,426,673 + +0.0
1,426,674 - +0.4
1,426,742 + -1.0
1,426,743 - +0.0
1,426,761 - +1.2
1,426,761 - +0.2
1,426,889 + SMc01357 0.37 -0.7
1,426,890 - SMc01357 0.38 +0.1
1,426,953 + SMc01357 0.78 -0.2
1,426,954 - SMc01357 0.79 -1.0
1,427,027 + SMc01356 0.13 -0.4
1,427,037 + SMc01356 0.16 -1.5
1,427,049 + SMc01356 0.20 -2.2
1,427,049 + +1.5
1,427,049 + SMc01356 0.20 -1.5
1,427,049 + SMc01356 0.20 -0.4
1,427,049 + SMc01356 0.20 -1.7
1,427,050 - SMc01356 0.20 -0.1
1,427,050 - SMc01356 0.20 -0.3
1,427,050 - SMc01356 0.20 -0.1
1,427,052 + SMc01356 0.21 -0.2
1,427,053 - SMc01356 0.21 +0.1
1,427,053 - SMc01356 0.21 -0.3
1,427,053 - SMc01356 0.21 -0.5
1,427,116 - SMc01356 0.40 +0.3
1,427,242 - SMc01356 0.77 +0.6
1,427,303 - -0.5
1,427,515 + SMc01355 0.53 -1.3

Or see this region's nucleotide sequence