Strain Fitness in Sinorhizobium meliloti 1021 around SMc00833

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00832 and SMc00833 overlap by 4 nucleotidesSMc00833 and SMc00926 are separated by 94 nucleotides SMc00832: SMc00832 - D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) (from data), at 853,444 to 854,883 SMc00832 SMc00833: SMc00833 - D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) (from data), at 854,880 to 856,097 SMc00833 SMc00926: SMc00926 - D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) (from data), at 856,192 to 857,523 SMc00926 Position (kb) 854 855 856 857Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 853.910 kb on + strand, within SMc00832at 853.958 kb on - strand, within SMc00832at 853.958 kb on - strand, within SMc00832at 853.965 kb on + strand, within SMc00832at 854.053 kb on + strand, within SMc00832at 854.454 kb on + strand, within SMc00832at 854.491 kb on + strand, within SMc00832at 854.491 kb on + strand, within SMc00832at 854.492 kb on - strand, within SMc00832at 854.492 kb on - strand, within SMc00832at 854.492 kb on - strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.493 kb on + strand, within SMc00832at 854.494 kb on - strand, within SMc00832at 854.494 kb on - strand, within SMc00832at 854.494 kb on - strand, within SMc00832at 854.632 kb on + strand, within SMc00832at 854.632 kb on + strand, within SMc00832at 854.687 kb on + strand, within SMc00832at 854.687 kb on + strand, within SMc00832at 854.773 kb on + strandat 854.835 kb on + strandat 854.836 kb on - strandat 854.836 kb on - strandat 854.836 kb on - strandat 855.054 kb on + strand, within SMc00833at 855.054 kb on + strand, within SMc00833at 855.054 kb on + strand, within SMc00833at 855.054 kb on + strand, within SMc00833at 855.055 kb on - strand, within SMc00833at 855.240 kb on + strand, within SMc00833at 855.241 kb on - strand, within SMc00833at 855.307 kb on + strand, within SMc00833at 855.307 kb on + strand, within SMc00833at 855.731 kb on - strand, within SMc00833at 855.843 kb on + strand, within SMc00833at 855.843 kb on + strand, within SMc00833at 855.843 kb on + strand, within SMc00833at 855.843 kb on + strand, within SMc00833at 855.912 kb on + strand, within SMc00833at 855.913 kb on - strand, within SMc00833at 855.913 kb on - strand, within SMc00833at 855.915 kb on - strand, within SMc00833at 856.058 kb on - strandat 856.058 kb on - strandat 856.058 kb on - strandat 856.096 kb on - strandat 856.127 kb on + strandat 856.128 kb on - strandat 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.342 kb on + strand, within SMc00926at 856.343 kb on - strand, within SMc00926at 856.387 kb on + strand, within SMc00926at 856.387 kb on + strand, within SMc00926at 856.504 kb on + strand, within SMc00926at 856.504 kb on + strand, within SMc00926at 856.504 kb on + strand, within SMc00926at 856.505 kb on - strand, within SMc00926at 856.505 kb on - strand, within SMc00926at 856.505 kb on - strand, within SMc00926at 856.505 kb on - strand, within SMc00926at 856.549 kb on + strand, within SMc00926at 856.549 kb on + strandat 856.550 kb on - strand, within SMc00926at 856.551 kb on + strand, within SMc00926at 856.551 kb on + strand, within SMc00926at 856.552 kb on - strand, within SMc00926at 856.552 kb on - strand, within SMc00926at 856.762 kb on + strand, within SMc00926at 857.026 kb on - strand, within SMc00926at 857.026 kb on - strand, within SMc00926at 857.059 kb on + strand, within SMc00926at 857.060 kb on - strand, within SMc00926at 857.067 kb on + strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.068 kb on - strand, within SMc00926at 857.089 kb on + strand, within SMc00926at 857.089 kb on + strand, within SMc00926at 857.089 kb on + strand, within SMc00926at 857.090 kb on - strand, within SMc00926

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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853,910 + SMc00832 0.32 -3.4
853,958 - SMc00832 0.36 -3.3
853,958 - SMc00832 0.36 -1.1
853,965 + SMc00832 0.36 -0.7
854,053 + SMc00832 0.42 -1.5
854,454 + SMc00832 0.70 -1.9
854,491 + SMc00832 0.73 -1.3
854,491 + SMc00832 0.73 -2.1
854,492 - SMc00832 0.73 +1.9
854,492 - SMc00832 0.73 -2.6
854,492 - SMc00832 0.73 -2.6
854,493 + SMc00832 0.73 -2.1
854,493 + SMc00832 0.73 -2.8
854,493 + SMc00832 0.73 -2.4
854,493 + SMc00832 0.73 -3.2
854,493 + SMc00832 0.73 -3.6
854,493 + SMc00832 0.73 -3.7
854,493 + SMc00832 0.73 -2.9
854,494 - SMc00832 0.73 -0.6
854,494 - SMc00832 0.73 -2.9
854,494 - SMc00832 0.73 -2.0
854,632 + SMc00832 0.82 -1.8
854,632 + SMc00832 0.82 -2.3
854,687 + SMc00832 0.86 -1.3
854,687 + SMc00832 0.86 -3.2
854,773 + -1.5
854,835 + -0.9
854,836 - -3.8
854,836 - -2.1
854,836 - -2.4
855,054 + SMc00833 0.14 -1.7
855,054 + SMc00833 0.14 -1.3
855,054 + SMc00833 0.14 -1.1
855,054 + SMc00833 0.14 -2.5
855,055 - SMc00833 0.14 -2.0
855,240 + SMc00833 0.30 -1.6
855,241 - SMc00833 0.30 -3.2
855,307 + SMc00833 0.35 -2.5
855,307 + SMc00833 0.35 -2.4
855,731 - SMc00833 0.70 -3.0
855,843 + SMc00833 0.79 -2.7
855,843 + SMc00833 0.79 -2.2
855,843 + SMc00833 0.79 -3.3
855,843 + SMc00833 0.79 -2.2
855,912 + SMc00833 0.85 -2.8
855,913 - SMc00833 0.85 -2.5
855,913 - SMc00833 0.85 -1.3
855,915 - SMc00833 0.85 -2.1
856,058 - -0.6
856,058 - -2.4
856,058 - -3.4
856,096 - -1.7
856,127 + +0.7
856,128 - -1.8
856,342 + SMc00926 0.11 -1.7
856,342 + SMc00926 0.11 +0.2
856,342 + SMc00926 0.11 -0.4
856,342 + SMc00926 0.11 -0.9
856,342 + SMc00926 0.11 -2.9
856,342 + SMc00926 0.11 -2.6
856,342 + SMc00926 0.11 -3.2
856,342 + SMc00926 0.11 -3.1
856,342 + SMc00926 0.11 -4.5
856,343 - SMc00926 0.11 -1.3
856,387 + SMc00926 0.15 -3.1
856,387 + SMc00926 0.15 -2.3
856,504 + SMc00926 0.23 -2.5
856,504 + SMc00926 0.23 -2.4
856,504 + SMc00926 0.23 -4.1
856,505 - SMc00926 0.23 -2.2
856,505 - SMc00926 0.23 -1.9
856,505 - SMc00926 0.23 -3.2
856,505 - SMc00926 0.23 -3.8
856,549 + SMc00926 0.27 -4.0
856,549 + -0.9
856,550 - SMc00926 0.27 -0.1
856,551 + SMc00926 0.27 -2.3
856,551 + SMc00926 0.27 -2.5
856,552 - SMc00926 0.27 -3.4
856,552 - SMc00926 0.27 -1.7
856,762 + SMc00926 0.43 -3.8
857,026 - SMc00926 0.63 -3.4
857,026 - SMc00926 0.63 -2.3
857,059 + SMc00926 0.65 -2.2
857,060 - SMc00926 0.65 -2.6
857,067 + SMc00926 0.66 -1.7
857,068 - SMc00926 0.66 -3.4
857,068 - SMc00926 0.66 -2.9
857,068 - SMc00926 0.66 -3.0
857,068 - SMc00926 0.66 -2.9
857,089 + SMc00926 0.67 -3.0
857,089 + SMc00926 0.67 -2.8
857,089 + SMc00926 0.67 -2.8
857,090 - SMc00926 0.67 -3.2

Or see this region's nucleotide sequence