Strain Fitness in Sinorhizobium meliloti 1021 around SMc00151

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00152 and SMc00151 are separated by 219 nucleotidesSMc00151 and SMc00150 are separated by 32 nucleotides SMc00152: SMc00152 - ribose-5-phosphate isomerase A, at 2,016,261 to 2,016,956 SMc00152 SMc00151: SMc00151 - phosphoglycolate phosphatase, at 2,017,176 to 2,017,859 SMc00151 SMc00150: SMc00150 - hypothetical protein, at 2,017,892 to 2,019,787 SMc00150 Position (kb) 2017 2018Strain fitness (log2 ratio) -3 -2 -1 0 1at 2017.099 kb on - strandat 2017.106 kb on - strandat 2017.190 kb on - strandat 2017.212 kb on - strandat 2017.291 kb on - strand, within SMc00151at 2017.291 kb on - strand, within SMc00151at 2017.561 kb on + strand, within SMc00151at 2017.561 kb on + strand, within SMc00151at 2017.562 kb on - strand, within SMc00151at 2017.562 kb on - strand, within SMc00151at 2017.596 kb on - strand, within SMc00151at 2017.790 kb on + strand, within SMc00151at 2017.790 kb on + strand, within SMc00151at 2017.790 kb on + strand, within SMc00151at 2017.791 kb on - strandat 2017.791 kb on - strandat 2017.791 kb on - strandat 2017.791 kb on - strandat 2017.791 kb on - strandat 2017.944 kb on + strandat 2017.944 kb on + strandat 2017.944 kb on + strandat 2017.944 kb on + strandat 2017.945 kb on - strandat 2017.945 kb on - strandat 2017.945 kb on - strandat 2017.945 kb on - strandat 2017.945 kb on - strandat 2017.945 kb on - strandat 2017.945 kb on - strandat 2017.948 kb on + strandat 2017.948 kb on + strandat 2017.948 kb on + strandat 2017.949 kb on - strandat 2017.949 kb on - strandat 2017.949 kb on - strandat 2017.949 kb on - strandat 2017.949 kb on - strandat 2017.949 kb on - strandat 2017.949 kb on - strandat 2017.949 kb on - strandat 2017.974 kb on + strandat 2018.013 kb on + strandat 2018.014 kb on - strandat 2018.022 kb on + strandat 2018.022 kb on + strandat 2018.022 kb on + strandat 2018.022 kb on + strandat 2018.023 kb on - strandat 2018.023 kb on - strandat 2018.023 kb on - strandat 2018.023 kb on - strandat 2018.073 kb on - strandat 2018.100 kb on - strand, within SMc00150at 2018.209 kb on + strand, within SMc00150at 2018.209 kb on + strand, within SMc00150at 2018.210 kb on - strand, within SMc00150at 2018.210 kb on - strand, within SMc00150at 2018.210 kb on - strand, within SMc00150at 2018.211 kb on + strand, within SMc00150at 2018.211 kb on + strand, within SMc00150at 2018.211 kb on + strand, within SMc00150at 2018.211 kb on + strand, within SMc00150at 2018.211 kb on + strand, within SMc00150at 2018.211 kb on + strand, within SMc00150at 2018.211 kb on + strand, within SMc00150at 2018.211 kb on + strand, within SMc00150at 2018.211 kb on + strand, within SMc00150at 2018.211 kb on + strand, within SMc00150at 2018.212 kb on - strand, within SMc00150at 2018.212 kb on - strand, within SMc00150at 2018.212 kb on - strand, within SMc00150at 2018.212 kb on - strand, within SMc00150at 2018.237 kb on + strand, within SMc00150at 2018.238 kb on - strand, within SMc00150at 2018.238 kb on - strand, within SMc00150at 2018.238 kb on - strand, within SMc00150at 2018.376 kb on + strand, within SMc00150at 2018.392 kb on + strand, within SMc00150at 2018.392 kb on + strand, within SMc00150at 2018.443 kb on - strand, within SMc00150at 2018.451 kb on - strand, within SMc00150at 2018.484 kb on + strand, within SMc00150at 2018.484 kb on + strand, within SMc00150at 2018.484 kb on + strand, within SMc00150at 2018.484 kb on + strand, within SMc00150at 2018.484 kb on + strand, within SMc00150at 2018.484 kb on + strand, within SMc00150at 2018.485 kb on - strand, within SMc00150at 2018.485 kb on - strand, within SMc00150at 2018.485 kb on - strand, within SMc00150at 2018.550 kb on + strand, within SMc00150at 2018.551 kb on - strand, within SMc00150at 2018.587 kb on - strand, within SMc00150at 2018.587 kb on - strand, within SMc00150at 2018.587 kb on - strand, within SMc00150at 2018.587 kb on - strand, within SMc00150at 2018.649 kb on - strand, within SMc00150at 2018.687 kb on + strand, within SMc00150at 2018.727 kb on + strand, within SMc00150at 2018.727 kb on + strand, within SMc00150at 2018.727 kb on + strand, within SMc00150at 2018.772 kb on + strand, within SMc00150at 2018.773 kb on - strand, within SMc00150at 2018.790 kb on + strand, within SMc00150

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,017,099 - +0.2
2,017,106 - -0.1
2,017,190 - -0.4
2,017,212 - -0.9
2,017,291 - SMc00151 0.17 -0.6
2,017,291 - SMc00151 0.17 -0.7
2,017,561 + SMc00151 0.56 -0.5
2,017,561 + SMc00151 0.56 +0.3
2,017,562 - SMc00151 0.56 +0.3
2,017,562 - SMc00151 0.56 +0.2
2,017,596 - SMc00151 0.61 -0.4
2,017,790 + SMc00151 0.90 -0.0
2,017,790 + SMc00151 0.90 -0.3
2,017,790 + SMc00151 0.90 -0.5
2,017,791 - +0.2
2,017,791 - -2.8
2,017,791 - -0.4
2,017,791 - -0.6
2,017,791 - -0.0
2,017,944 + -0.4
2,017,944 + -0.1
2,017,944 + +0.2
2,017,944 + +0.3
2,017,945 - +0.1
2,017,945 - +0.2
2,017,945 - +0.1
2,017,945 - +0.1
2,017,945 - +0.1
2,017,945 - +0.6
2,017,945 - +0.4
2,017,948 + +0.2
2,017,948 + +0.2
2,017,948 + +0.0
2,017,949 - +0.1
2,017,949 - -0.2
2,017,949 - +0.1
2,017,949 - +0.5
2,017,949 - +0.1
2,017,949 - +1.0
2,017,949 - -0.3
2,017,949 - +0.6
2,017,974 + +0.5
2,018,013 + +1.4
2,018,014 - +0.7
2,018,022 + +1.2
2,018,022 + +0.2
2,018,022 + +0.3
2,018,022 + +0.0
2,018,023 - +0.8
2,018,023 - -1.2
2,018,023 - +0.1
2,018,023 - +0.2
2,018,073 - -0.2
2,018,100 - SMc00150 0.11 -0.2
2,018,209 + SMc00150 0.17 -0.4
2,018,209 + SMc00150 0.17 +1.3
2,018,210 - SMc00150 0.17 +0.3
2,018,210 - SMc00150 0.17 -0.1
2,018,210 - SMc00150 0.17 +0.5
2,018,211 + SMc00150 0.17 +0.0
2,018,211 + SMc00150 0.17 +0.5
2,018,211 + SMc00150 0.17 +0.1
2,018,211 + SMc00150 0.17 +1.0
2,018,211 + SMc00150 0.17 -0.3
2,018,211 + SMc00150 0.17 +0.1
2,018,211 + SMc00150 0.17 +0.1
2,018,211 + SMc00150 0.17 -0.7
2,018,211 + SMc00150 0.17 -0.1
2,018,211 + SMc00150 0.17 +0.1
2,018,212 - SMc00150 0.17 +0.4
2,018,212 - SMc00150 0.17 +0.6
2,018,212 - SMc00150 0.17 +0.1
2,018,212 - SMc00150 0.17 -0.2
2,018,237 + SMc00150 0.18 +0.4
2,018,238 - SMc00150 0.18 -0.3
2,018,238 - SMc00150 0.18 -0.1
2,018,238 - SMc00150 0.18 -0.0
2,018,376 + SMc00150 0.26 +0.2
2,018,392 + SMc00150 0.26 +0.4
2,018,392 + SMc00150 0.26 +0.2
2,018,443 - SMc00150 0.29 +0.2
2,018,451 - SMc00150 0.29 +0.1
2,018,484 + SMc00150 0.31 +0.1
2,018,484 + SMc00150 0.31 +1.1
2,018,484 + SMc00150 0.31 -0.1
2,018,484 + SMc00150 0.31 -0.1
2,018,484 + SMc00150 0.31 +1.0
2,018,484 + SMc00150 0.31 +0.0
2,018,485 - SMc00150 0.31 +0.0
2,018,485 - SMc00150 0.31 +0.2
2,018,485 - SMc00150 0.31 +0.0
2,018,550 + SMc00150 0.35 +0.0
2,018,551 - SMc00150 0.35 -0.3
2,018,587 - SMc00150 0.37 +0.6
2,018,587 - SMc00150 0.37 -0.6
2,018,587 - SMc00150 0.37 +0.6
2,018,587 - SMc00150 0.37 +0.1
2,018,649 - SMc00150 0.40 -0.4
2,018,687 + SMc00150 0.42 +0.2
2,018,727 + SMc00150 0.44 +0.3
2,018,727 + SMc00150 0.44 +0.0
2,018,727 + SMc00150 0.44 +0.3
2,018,772 + SMc00150 0.46 +0.2
2,018,773 - SMc00150 0.46 +0.9
2,018,790 + SMc00150 0.47 +1.3

Or see this region's nucleotide sequence