Strain Fitness in Sinorhizobium meliloti 1021 around SMc00079

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00078 and SMc00079 are separated by 128 nucleotidesSMc00079 and SMc00080 are separated by 184 nucleotides SMc00078: SMc00078 - Leu/Ile/Val-binding protein, at 1,011,536 to 1,012,642 SMc00078 SMc00079: SMc00079 - hypothetical protein, at 1,012,771 to 1,013,466 SMc00079 SMc00080: SMc00080 - hypothetical protein, at 1,013,651 to 1,014,334 SMc00080 Position (kb) 1012 1013 1014Strain fitness (log2 ratio) -3 -2 -1 0 1at 1011.840 kb on + strand, within SMc00078at 1011.841 kb on - strand, within SMc00078at 1011.973 kb on - strand, within SMc00078at 1011.984 kb on + strand, within SMc00078at 1012.062 kb on + strand, within SMc00078at 1012.062 kb on + strand, within SMc00078at 1012.063 kb on - strand, within SMc00078at 1012.063 kb on - strand, within SMc00078at 1012.063 kb on - strand, within SMc00078at 1012.128 kb on + strand, within SMc00078at 1012.185 kb on + strand, within SMc00078at 1012.185 kb on + strand, within SMc00078at 1012.298 kb on - strand, within SMc00078at 1012.362 kb on + strand, within SMc00078at 1012.362 kb on + strand, within SMc00078at 1012.362 kb on + strand, within SMc00078at 1012.362 kb on + strand, within SMc00078at 1012.362 kb on + strand, within SMc00078at 1012.362 kb on + strand, within SMc00078at 1012.363 kb on - strand, within SMc00078at 1012.363 kb on - strand, within SMc00078at 1012.363 kb on - strand, within SMc00078at 1012.363 kb on - strand, within SMc00078at 1012.368 kb on - strand, within SMc00078at 1012.688 kb on + strandat 1012.689 kb on - strandat 1012.689 kb on - strandat 1012.773 kb on - strandat 1013.072 kb on + strand, within SMc00079at 1013.072 kb on + strand, within SMc00079at 1013.072 kb on + strand, within SMc00079at 1013.073 kb on - strand, within SMc00079at 1013.467 kb on - strandat 1013.546 kb on - strandat 1013.547 kb on + strandat 1013.547 kb on + strandat 1013.547 kb on + strandat 1013.547 kb on + strandat 1013.548 kb on - strandat 1013.637 kb on - strandat 1013.995 kb on - strand, within SMc00080at 1013.995 kb on - strand, within SMc00080at 1014.120 kb on + strand, within SMc00080at 1014.314 kb on + strandat 1014.314 kb on + strandat 1014.315 kb on - strandat 1014.315 kb on - strandat 1014.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,011,840 + SMc00078 0.27 -0.7
1,011,841 - SMc00078 0.28 -0.2
1,011,973 - SMc00078 0.39 +0.1
1,011,984 + SMc00078 0.40 -0.8
1,012,062 + SMc00078 0.48 -1.5
1,012,062 + SMc00078 0.48 -3.1
1,012,063 - SMc00078 0.48 -1.0
1,012,063 - SMc00078 0.48 -0.5
1,012,063 - SMc00078 0.48 +0.1
1,012,128 + SMc00078 0.53 +0.3
1,012,185 + SMc00078 0.59 +0.2
1,012,185 + SMc00078 0.59 -0.2
1,012,298 - SMc00078 0.69 -0.4
1,012,362 + SMc00078 0.75 -0.5
1,012,362 + SMc00078 0.75 -1.0
1,012,362 + SMc00078 0.75 -0.0
1,012,362 + SMc00078 0.75 +0.9
1,012,362 + SMc00078 0.75 -0.3
1,012,362 + SMc00078 0.75 +0.1
1,012,363 - SMc00078 0.75 -0.8
1,012,363 - SMc00078 0.75 -0.3
1,012,363 - SMc00078 0.75 -0.2
1,012,363 - SMc00078 0.75 -0.3
1,012,368 - SMc00078 0.75 +0.2
1,012,688 + +0.2
1,012,689 - +1.3
1,012,689 - -1.1
1,012,773 - +0.4
1,013,072 + SMc00079 0.43 -0.4
1,013,072 + SMc00079 0.43 +0.2
1,013,072 + SMc00079 0.43 +0.3
1,013,073 - SMc00079 0.43 -0.6
1,013,467 - +0.1
1,013,546 - -0.0
1,013,547 + -0.2
1,013,547 + -0.8
1,013,547 + +0.3
1,013,547 + -0.2
1,013,548 - +0.0
1,013,637 - -0.4
1,013,995 - SMc00080 0.50 -0.7
1,013,995 - SMc00080 0.50 -1.6
1,014,120 + SMc00080 0.69 +0.0
1,014,314 + +0.3
1,014,314 + -1.6
1,014,315 - +0.8
1,014,315 - -0.3
1,014,315 - -0.0

Or see this region's nucleotide sequence