Strain Fitness in Sinorhizobium meliloti 1021 around SMc00009

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00071 and SMc00009 are separated by 401 nucleotidesSMc00009 and SMc00010 are separated by 19 nucleotides SMc00071: SMc00071 - hypothetical protein, at 991,106 to 991,636 SMc00071 SMc00009: SMc00009 - cytochrome C oxidase subunit II protein, at 992,038 to 992,922 SMc00009 SMc00010: SMc00010 - cytochrome C oxidase polypeptide I transmembrane protein, at 992,942 to 994,630 SMc00010 Position (kb) 992 993Strain fitness (log2 ratio) -2 -1 0 1at 991.057 kb on - strandat 991.669 kb on - strandat 991.690 kb on - strandat 992.185 kb on + strand, within SMc00009at 992.185 kb on + strand, within SMc00009at 992.185 kb on + strand, within SMc00009at 992.186 kb on - strand, within SMc00009at 992.186 kb on - strand, within SMc00009at 992.298 kb on + strand, within SMc00009at 992.455 kb on + strand, within SMc00009at 992.725 kb on + strand, within SMc00009at 992.726 kb on - strand, within SMc00009at 992.726 kb on - strand, within SMc00009at 992.728 kb on + strand, within SMc00009at 992.729 kb on - strand, within SMc00009at 992.767 kb on + strand, within SMc00009at 992.767 kb on + strand, within SMc00009at 992.767 kb on + strand, within SMc00009at 992.806 kb on + strand, within SMc00009at 992.806 kb on + strand, within SMc00009at 993.191 kb on + strand, within SMc00010

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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991,057 - +0.3
991,669 - +1.2
991,690 - +0.6
992,185 + SMc00009 0.17 +0.3
992,185 + SMc00009 0.17 -2.7
992,185 + SMc00009 0.17 -0.3
992,186 - SMc00009 0.17 -0.5
992,186 - SMc00009 0.17 -0.5
992,298 + SMc00009 0.29 -1.9
992,455 + SMc00009 0.47 -2.3
992,725 + SMc00009 0.78 -1.1
992,726 - SMc00009 0.78 -0.3
992,726 - SMc00009 0.78 -2.1
992,728 + SMc00009 0.78 -2.2
992,729 - SMc00009 0.78 -1.1
992,767 + SMc00009 0.82 -0.4
992,767 + SMc00009 0.82 -1.6
992,767 + SMc00009 0.82 -1.0
992,806 + SMc00009 0.87 -1.2
992,806 + SMc00009 0.87 -0.1
993,191 + SMc00010 0.15 -0.7

Or see this region's nucleotide sequence