Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0403 and SMa0404 are separated by 1 nucleotides SMa0404 and SMa0405 are separated by 352 nucleotides SMa0405 and SMa0407 are separated by 352 nucleotides
SMa0403: SMa0403 - hypothetical protein, at 218,550 to 219,938
SMa0403
SMa0404: SMa0404 - FMN-dependent dehydrogenase, at 219,940 to 221,085
SMa0404
SMa0405: SMa0405 - transposase, fragment, at 221,438 to 221,725
SMa0405
SMa0407: SMa0407 - hypothetical protein, at 222,078 to 222,866
SMa0407
Position (kb) 219
220
221
222 Strain fitness (log2 ratio) -1
0
1 at 219.102 kb on + strand, within SMa0403 at 219.103 kb on - strand, within SMa0403 at 219.119 kb on + strand, within SMa0403 at 219.119 kb on + strand, within SMa0403 at 219.120 kb on - strand, within SMa0403 at 219.181 kb on + strand, within SMa0403 at 219.182 kb on - strand, within SMa0403 at 219.228 kb on + strand, within SMa0403 at 219.228 kb on + strand, within SMa0403 at 219.229 kb on - strand, within SMa0403 at 219.316 kb on - strand, within SMa0403 at 219.562 kb on - strand, within SMa0403 at 219.562 kb on - strand, within SMa0403 at 219.588 kb on + strand, within SMa0403 at 219.676 kb on + strand, within SMa0403 at 219.842 kb on - strand at 219.842 kb on - strand at 219.896 kb on - strand at 220.009 kb on + strand at 220.010 kb on - strand at 220.012 kb on - strand at 220.074 kb on - strand, within SMa0404 at 220.129 kb on + strand, within SMa0404 at 220.254 kb on - strand, within SMa0404 at 220.324 kb on + strand, within SMa0404 at 220.325 kb on - strand, within SMa0404 at 220.362 kb on - strand, within SMa0404 at 220.376 kb on - strand, within SMa0404 at 220.419 kb on + strand, within SMa0404 at 220.848 kb on + strand, within SMa0404 at 220.849 kb on - strand, within SMa0404 at 220.849 kb on - strand, within SMa0404 at 220.933 kb on + strand, within SMa0404 at 220.939 kb on + strand, within SMa0404 at 221.006 kb on - strand at 221.160 kb on + strand at 221.160 kb on + strand at 221.160 kb on + strand at 221.161 kb on - strand at 221.161 kb on - strand at 221.161 kb on - strand at 221.209 kb on + strand at 221.209 kb on + strand at 221.297 kb on + strand at 221.297 kb on + strand at 221.526 kb on - strand, within SMa0405 at 221.526 kb on - strand, within SMa0405 at 221.698 kb on + strand at 221.699 kb on - strand at 221.813 kb on + strand at 221.822 kb on - strand at 221.854 kb on + strand at 221.888 kb on - strand at 221.941 kb on + strand at 221.942 kb on - strand at 222.055 kb on + strand at 222.055 kb on + strand at 222.056 kb on - strand at 222.062 kb on + strand at 222.063 kb on - strand at 222.063 kb on - strand at 222.063 kb on - strand at 222.069 kb on + strand at 222.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 219,102 + SMa0403 0.40 +0.3 219,103 - SMa0403 0.40 -0.1 219,119 + SMa0403 0.41 +1.6 219,119 + SMa0403 0.41 +0.1 219,120 - SMa0403 0.41 -0.0 219,181 + SMa0403 0.45 -0.3 219,182 - SMa0403 0.46 -0.1 219,228 + SMa0403 0.49 +0.5 219,228 + SMa0403 0.49 -1.1 219,229 - SMa0403 0.49 -1.1 219,316 - SMa0403 0.55 -0.1 219,562 - SMa0403 0.73 +1.0 219,562 - SMa0403 0.73 +0.3 219,588 + SMa0403 0.75 +0.4 219,676 + SMa0403 0.81 -0.0 219,842 - +0.7 219,842 - +0.6 219,896 - -0.0 220,009 + +0.7 220,010 - -0.2 220,012 - -1.3 220,074 - SMa0404 0.12 +0.1 220,129 + SMa0404 0.16 +0.4 220,254 - SMa0404 0.27 -0.6 220,324 + SMa0404 0.34 -0.2 220,325 - SMa0404 0.34 +0.3 220,362 - SMa0404 0.37 -0.1 220,376 - SMa0404 0.38 -0.3 220,419 + SMa0404 0.42 -0.4 220,848 + SMa0404 0.79 -0.2 220,849 - SMa0404 0.79 +0.3 220,849 - SMa0404 0.79 -0.2 220,933 + SMa0404 0.87 -0.2 220,939 + SMa0404 0.87 +1.2 221,006 - -0.8 221,160 + +1.1 221,160 + -0.4 221,160 + -0.2 221,161 - +0.5 221,161 - +0.4 221,161 - +0.2 221,209 + -0.0 221,209 + +0.2 221,297 + -0.7 221,297 + -1.4 221,526 - SMa0405 0.31 -0.1 221,526 - SMa0405 0.31 +1.0 221,698 + +1.4 221,699 - +0.8 221,813 + +0.1 221,822 - +0.3 221,854 + -0.0 221,888 - -0.1 221,941 + -0.5 221,942 - -0.0 222,055 + +0.3 222,055 + -0.2 222,056 - +0.4 222,062 + -0.2 222,063 - +0.7 222,063 - -0.1 222,063 - +0.1 222,069 + -0.7 222,070 - +0.0
Or see this region's nucleotide sequence