Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0369 and SMa0372 are separated by 932 nucleotides SMa0372 and SMa0374 are separated by 111 nucleotides
SMa0369: SMa0369 - hypothetical protein, at 197,906 to 198,172
SMa0369
SMa0372: SMa0372 - LysR family transcriptional regulator, at 199,105 to 200,004
SMa0372
SMa0374: SMa0374 - dioxygenase/lyase, at 200,116 to 201,048
SMa0374
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 198.115 kb on + strand, within SMa0369 at 198.118 kb on - strand, within SMa0369 at 198.170 kb on + strand at 198.171 kb on - strand at 198.220 kb on + strand at 198.256 kb on - strand at 198.256 kb on - strand at 198.289 kb on + strand at 198.325 kb on + strand at 198.326 kb on - strand at 198.326 kb on - strand at 198.423 kb on + strand at 198.423 kb on + strand at 198.764 kb on + strand at 198.764 kb on + strand at 198.764 kb on + strand at 198.764 kb on + strand at 198.765 kb on - strand at 198.846 kb on + strand at 198.877 kb on + strand at 198.909 kb on + strand at 198.909 kb on + strand at 198.910 kb on - strand at 198.910 kb on - strand at 198.917 kb on + strand at 198.917 kb on + strand at 198.918 kb on - strand at 198.920 kb on + strand at 199.060 kb on + strand at 199.061 kb on - strand at 199.061 kb on - strand at 199.061 kb on - strand at 199.085 kb on + strand at 199.086 kb on - strand at 199.100 kb on - strand at 199.100 kb on - strand at 199.200 kb on - strand, within SMa0372 at 199.247 kb on - strand, within SMa0372 at 199.379 kb on - strand, within SMa0372 at 199.434 kb on - strand, within SMa0372 at 199.534 kb on - strand, within SMa0372 at 199.589 kb on + strand, within SMa0372 at 199.589 kb on + strand, within SMa0372 at 199.838 kb on - strand, within SMa0372 at 200.051 kb on + strand at 200.073 kb on + strand at 200.082 kb on - strand at 200.252 kb on - strand, within SMa0374 at 200.260 kb on + strand, within SMa0374 at 200.260 kb on + strand, within SMa0374 at 200.263 kb on + strand, within SMa0374 at 200.264 kb on - strand, within SMa0374 at 200.302 kb on + strand, within SMa0374 at 200.303 kb on - strand, within SMa0374 at 200.303 kb on - strand, within SMa0374 at 200.443 kb on - strand, within SMa0374 at 200.672 kb on + strand, within SMa0374 at 200.672 kb on + strand, within SMa0374 at 200.672 kb on + strand at 200.673 kb on - strand, within SMa0374 at 200.685 kb on - strand, within SMa0374 at 200.717 kb on + strand, within SMa0374 at 200.772 kb on + strand, within SMa0374 at 200.772 kb on + strand, within SMa0374 at 200.884 kb on + strand, within SMa0374 at 200.885 kb on - strand, within SMa0374 at 200.926 kb on - strand, within SMa0374 at 200.979 kb on + strand at 200.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 198,115 + SMa0369 0.78 -1.0 198,118 - SMa0369 0.79 +0.5 198,170 + +0.1 198,171 - -0.3 198,220 + +0.6 198,256 - -0.4 198,256 - -0.4 198,289 + -0.0 198,325 + +0.1 198,326 - +0.0 198,326 - -0.7 198,423 + -0.0 198,423 + -0.2 198,764 + +0.1 198,764 + +2.0 198,764 + +2.0 198,764 + +0.0 198,765 - +0.7 198,846 + -0.2 198,877 + -0.4 198,909 + +0.0 198,909 + -0.2 198,910 - -0.3 198,910 - +0.7 198,917 + +0.2 198,917 + +1.3 198,918 - -1.0 198,920 + -0.2 199,060 + +0.2 199,061 - -0.3 199,061 - -0.3 199,061 - -0.3 199,085 + -0.1 199,086 - +0.7 199,100 - -0.1 199,100 - +0.0 199,200 - SMa0372 0.11 +0.5 199,247 - SMa0372 0.16 -0.1 199,379 - SMa0372 0.30 -1.2 199,434 - SMa0372 0.37 -0.6 199,534 - SMa0372 0.48 -1.6 199,589 + SMa0372 0.54 -0.2 199,589 + SMa0372 0.54 -0.3 199,838 - SMa0372 0.81 -0.8 200,051 + -0.2 200,073 + -0.4 200,082 - -0.1 200,252 - SMa0374 0.15 -1.4 200,260 + SMa0374 0.15 -1.4 200,260 + SMa0374 0.15 +0.1 200,263 + SMa0374 0.16 -0.4 200,264 - SMa0374 0.16 -0.9 200,302 + SMa0374 0.20 +0.6 200,303 - SMa0374 0.20 -1.7 200,303 - SMa0374 0.20 -0.8 200,443 - SMa0374 0.35 -0.4 200,672 + SMa0374 0.60 +0.1 200,672 + SMa0374 0.60 -0.1 200,672 + +0.0 200,673 - SMa0374 0.60 -0.1 200,685 - SMa0374 0.61 +1.0 200,717 + SMa0374 0.64 +0.3 200,772 + SMa0374 0.70 -0.2 200,772 + SMa0374 0.70 -0.2 200,884 + SMa0374 0.82 -0.3 200,885 - SMa0374 0.82 -0.2 200,926 - SMa0374 0.87 -2.5 200,979 + -0.9 200,980 - -0.3
Or see this region's nucleotide sequence