Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21434

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21433 and SM_b21685 are separated by 107 nucleotidesSM_b21685 and SM_b21434 are separated by 9 nucleotidesSM_b21434 and SM_b21435 are separated by 55 nucleotides SM_b21433: SM_b21433 - methyl-transferase, S-adenosyl-L-methionine (SAM)-MTase, at 1,363,048 to 1,363,857 _b21433 SM_b21685: SM_b21685 - hypothetical protein, at 1,363,965 to 1,364,120 _b21685 SM_b21434: SM_b21434 - LysR family transcriptional regulator, at 1,364,130 to 1,365,050 _b21434 SM_b21435: SM_b21435 - allantoate amidohydrolase, at 1,365,106 to 1,366,350 _b21435 Position (kb) 1364 1365 1366Strain fitness (log2 ratio) -2 -1 0 1at 1363.359 kb on + strand, within SM_b21433at 1363.359 kb on + strand, within SM_b21433at 1363.360 kb on - strand, within SM_b21433at 1363.389 kb on + strand, within SM_b21433at 1363.389 kb on + strand, within SM_b21433at 1363.390 kb on - strand, within SM_b21433at 1363.697 kb on + strand, within SM_b21433at 1363.733 kb on + strand, within SM_b21433at 1363.734 kb on - strand, within SM_b21433at 1363.760 kb on + strand, within SM_b21433at 1363.761 kb on - strand, within SM_b21433at 1363.761 kb on - strand, within SM_b21433at 1363.890 kb on + strandat 1363.890 kb on + strandat 1363.891 kb on - strandat 1364.042 kb on + strand, within SM_b21685at 1364.119 kb on - strandat 1364.335 kb on - strand, within SM_b21434at 1364.335 kb on - strand, within SM_b21434at 1364.373 kb on - strand, within SM_b21434at 1364.478 kb on + strand, within SM_b21434at 1364.501 kb on - strand, within SM_b21434at 1364.575 kb on + strand, within SM_b21434at 1364.575 kb on + strand, within SM_b21434at 1364.575 kb on + strand, within SM_b21434at 1364.575 kb on + strand, within SM_b21434at 1364.576 kb on - strand, within SM_b21434at 1364.576 kb on - strand, within SM_b21434at 1364.576 kb on - strand, within SM_b21434at 1364.576 kb on - strand, within SM_b21434at 1364.576 kb on - strand, within SM_b21434at 1364.576 kb on - strand, within SM_b21434at 1364.644 kb on - strand, within SM_b21434at 1364.644 kb on - strand, within SM_b21434at 1364.644 kb on - strand, within SM_b21434at 1364.676 kb on - strand, within SM_b21434at 1364.827 kb on + strand, within SM_b21434at 1364.827 kb on + strand, within SM_b21434at 1364.827 kb on + strand, within SM_b21434at 1364.828 kb on - strand, within SM_b21434at 1365.257 kb on + strand, within SM_b21435at 1365.257 kb on + strand, within SM_b21435at 1365.299 kb on + strand, within SM_b21435at 1365.382 kb on + strand, within SM_b21435at 1365.382 kb on + strand, within SM_b21435at 1365.663 kb on + strand, within SM_b21435at 1365.663 kb on + strand, within SM_b21435at 1365.663 kb on + strand, within SM_b21435at 1365.663 kb on + strand, within SM_b21435at 1365.664 kb on - strand, within SM_b21435at 1365.701 kb on + strand, within SM_b21435at 1365.701 kb on + strand, within SM_b21435at 1365.903 kb on - strand, within SM_b21435at 1366.020 kb on + strand, within SM_b21435

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,363,359 + SM_b21433 0.38 -0.2
1,363,359 + SM_b21433 0.38 -0.4
1,363,360 - SM_b21433 0.39 -0.9
1,363,389 + SM_b21433 0.42 -0.4
1,363,389 + SM_b21433 0.42 -0.2
1,363,390 - SM_b21433 0.42 -0.9
1,363,697 + SM_b21433 0.80 -0.3
1,363,733 + SM_b21433 0.85 +0.4
1,363,734 - SM_b21433 0.85 +0.0
1,363,760 + SM_b21433 0.88 -0.1
1,363,761 - SM_b21433 0.88 +0.4
1,363,761 - SM_b21433 0.88 -0.7
1,363,890 + -0.5
1,363,890 + -0.2
1,363,891 - +0.7
1,364,042 + SM_b21685 0.49 +1.2
1,364,119 - -2.0
1,364,335 - SM_b21434 0.22 -0.2
1,364,335 - SM_b21434 0.22 +0.4
1,364,373 - SM_b21434 0.26 +0.9
1,364,478 + SM_b21434 0.38 +0.0
1,364,501 - SM_b21434 0.40 -0.2
1,364,575 + SM_b21434 0.48 -0.4
1,364,575 + SM_b21434 0.48 +0.3
1,364,575 + SM_b21434 0.48 +0.3
1,364,575 + SM_b21434 0.48 +1.5
1,364,576 - SM_b21434 0.48 +0.4
1,364,576 - SM_b21434 0.48 -0.1
1,364,576 - SM_b21434 0.48 +0.6
1,364,576 - SM_b21434 0.48 +0.1
1,364,576 - SM_b21434 0.48 +0.3
1,364,576 - SM_b21434 0.48 +0.4
1,364,644 - SM_b21434 0.56 +0.0
1,364,644 - SM_b21434 0.56 +0.0
1,364,644 - SM_b21434 0.56 +0.4
1,364,676 - SM_b21434 0.59 -0.1
1,364,827 + SM_b21434 0.76 +0.4
1,364,827 + SM_b21434 0.76 -0.2
1,364,827 + SM_b21434 0.76 -0.4
1,364,828 - SM_b21434 0.76 +0.1
1,365,257 + SM_b21435 0.12 -1.4
1,365,257 + SM_b21435 0.12 +0.7
1,365,299 + SM_b21435 0.16 -0.3
1,365,382 + SM_b21435 0.22 -0.5
1,365,382 + SM_b21435 0.22 -0.7
1,365,663 + SM_b21435 0.45 +0.1
1,365,663 + SM_b21435 0.45 +0.1
1,365,663 + SM_b21435 0.45 -0.0
1,365,663 + SM_b21435 0.45 +0.1
1,365,664 - SM_b21435 0.45 +0.3
1,365,701 + SM_b21435 0.48 +0.3
1,365,701 + SM_b21435 0.48 +0.7
1,365,903 - SM_b21435 0.64 -1.0
1,366,020 + SM_b21435 0.73 -0.4

Or see this region's nucleotide sequence