Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20857 and SM_b20858 are separated by 156 nucleotides SM_b20858 and SM_b20859 are separated by 515 nucleotides
SM_b20857: SM_b20857 - glucose-6-phosphate isomerase, at 1,262,117 to 1,262,719
_b20857
SM_b20858: SM_b20858 - hypothetical protein, at 1,262,876 to 1,263,361
_b20858
SM_b20859: SM_b20859 - AraC family transcriptional regulator, at 1,263,877 to 1,264,827
_b20859
Position (kb)
1262
1263
1264 Strain fitness (log2 ratio)
-2
-1
0
1 at 1262.124 kb on + strand at 1262.125 kb on - strand at 1262.125 kb on - strand at 1262.192 kb on + strand, within SM_b20857 at 1262.193 kb on - strand, within SM_b20857 at 1262.193 kb on - strand, within SM_b20857 at 1262.226 kb on - strand, within SM_b20857 at 1262.244 kb on - strand, within SM_b20857 at 1262.244 kb on - strand, within SM_b20857 at 1262.254 kb on + strand, within SM_b20857 at 1262.283 kb on - strand, within SM_b20857 at 1262.283 kb on - strand, within SM_b20857 at 1262.372 kb on + strand, within SM_b20857 at 1262.424 kb on - strand, within SM_b20857 at 1262.506 kb on + strand, within SM_b20857 at 1262.506 kb on + strand, within SM_b20857 at 1262.507 kb on - strand, within SM_b20857 at 1262.507 kb on - strand, within SM_b20857 at 1262.507 kb on - strand, within SM_b20857 at 1262.507 kb on - strand, within SM_b20857 at 1262.513 kb on + strand, within SM_b20857 at 1262.513 kb on + strand, within SM_b20857 at 1262.513 kb on + strand, within SM_b20857 at 1262.514 kb on - strand, within SM_b20857 at 1262.514 kb on - strand, within SM_b20857 at 1262.514 kb on - strand, within SM_b20857 at 1262.514 kb on - strand, within SM_b20857 at 1262.514 kb on - strand, within SM_b20857 at 1262.514 kb on - strand, within SM_b20857 at 1262.568 kb on + strand, within SM_b20857 at 1262.568 kb on + strand, within SM_b20857 at 1262.568 kb on + strand, within SM_b20857 at 1262.569 kb on - strand, within SM_b20857 at 1262.606 kb on + strand, within SM_b20857 at 1262.643 kb on + strand, within SM_b20857 at 1262.644 kb on - strand, within SM_b20857 at 1262.718 kb on - strand at 1262.718 kb on - strand at 1262.869 kb on + strand at 1262.869 kb on + strand at 1263.135 kb on + strand, within SM_b20858 at 1263.135 kb on + strand, within SM_b20858 at 1263.206 kb on + strand, within SM_b20858 at 1263.206 kb on + strand, within SM_b20858 at 1263.206 kb on + strand, within SM_b20858 at 1263.206 kb on + strand, within SM_b20858 at 1263.207 kb on - strand, within SM_b20858 at 1263.207 kb on - strand, within SM_b20858 at 1263.207 kb on - strand, within SM_b20858 at 1263.207 kb on - strand, within SM_b20858 at 1263.207 kb on - strand, within SM_b20858 at 1263.368 kb on + strand at 1263.403 kb on + strand at 1263.472 kb on - strand at 1263.481 kb on - strand at 1263.540 kb on + strand at 1263.544 kb on - strand at 1263.544 kb on - strand at 1263.583 kb on + strand at 1263.662 kb on + strand at 1263.662 kb on + strand at 1263.674 kb on + strand at 1263.674 kb on + strand at 1263.675 kb on - strand at 1263.675 kb on - strand at 1263.675 kb on - strand at 1263.702 kb on - strand at 1263.843 kb on + strand at 1263.844 kb on - strand at 1263.844 kb on - strand at 1263.844 kb on - strand at 1263.844 kb on - strand at 1264.008 kb on + strand, within SM_b20859 at 1264.008 kb on + strand, within SM_b20859 at 1264.008 kb on + strand, within SM_b20859 at 1264.008 kb on + strand, within SM_b20859 at 1264.009 kb on - strand, within SM_b20859 at 1264.009 kb on - strand, within SM_b20859 at 1264.009 kb on - strand, within SM_b20859 at 1264.009 kb on - strand, within SM_b20859 at 1264.112 kb on - strand, within SM_b20859 at 1264.112 kb on - strand, within SM_b20859 at 1264.124 kb on + strand, within SM_b20859 at 1264.125 kb on - strand, within SM_b20859 at 1264.125 kb on - strand, within SM_b20859 at 1264.191 kb on - strand, within SM_b20859 at 1264.255 kb on + strand, within SM_b20859 at 1264.256 kb on - strand, within SM_b20859 at 1264.300 kb on - strand, within SM_b20859 at 1264.300 kb on - strand, within SM_b20859 at 1264.300 kb on - strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.350 kb on + strand, within SM_b20859 at 1264.351 kb on - strand, within SM_b20859 at 1264.351 kb on - strand, within SM_b20859 at 1264.351 kb on - strand, within SM_b20859
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,262,124 + -0.4 1,262,125 - +0.3 1,262,125 - -1.1 1,262,192 + SM_b20857 0.12 -1.1 1,262,193 - SM_b20857 0.13 +0.5 1,262,193 - SM_b20857 0.13 +1.0 1,262,226 - SM_b20857 0.18 -0.3 1,262,244 - SM_b20857 0.21 +0.0 1,262,244 - SM_b20857 0.21 -0.1 1,262,254 + SM_b20857 0.23 -0.7 1,262,283 - SM_b20857 0.28 +0.1 1,262,283 - SM_b20857 0.28 -0.0 1,262,372 + SM_b20857 0.42 +0.3 1,262,424 - SM_b20857 0.51 -0.6 1,262,506 + SM_b20857 0.65 -1.5 1,262,506 + SM_b20857 0.65 -0.3 1,262,507 - SM_b20857 0.65 -0.4 1,262,507 - SM_b20857 0.65 +0.2 1,262,507 - SM_b20857 0.65 -0.1 1,262,507 - SM_b20857 0.65 +0.6 1,262,513 + SM_b20857 0.66 +0.4 1,262,513 + SM_b20857 0.66 +0.1 1,262,513 + SM_b20857 0.66 +0.2 1,262,514 - SM_b20857 0.66 -0.4 1,262,514 - SM_b20857 0.66 +0.4 1,262,514 - SM_b20857 0.66 +0.3 1,262,514 - SM_b20857 0.66 +0.2 1,262,514 - SM_b20857 0.66 -1.5 1,262,514 - SM_b20857 0.66 +0.2 1,262,568 + SM_b20857 0.75 -0.3 1,262,568 + SM_b20857 0.75 -0.3 1,262,568 + SM_b20857 0.75 -0.2 1,262,569 - SM_b20857 0.75 -1.0 1,262,606 + SM_b20857 0.81 -0.2 1,262,643 + SM_b20857 0.87 +0.1 1,262,644 - SM_b20857 0.87 +0.2 1,262,718 - +0.3 1,262,718 - +0.5 1,262,869 + -0.5 1,262,869 + -0.1 1,263,135 + SM_b20858 0.53 +0.2 1,263,135 + SM_b20858 0.53 -0.0 1,263,206 + SM_b20858 0.68 -0.8 1,263,206 + SM_b20858 0.68 -0.1 1,263,206 + SM_b20858 0.68 +0.6 1,263,206 + SM_b20858 0.68 -0.3 1,263,207 - SM_b20858 0.68 +0.2 1,263,207 - SM_b20858 0.68 -1.8 1,263,207 - SM_b20858 0.68 -0.0 1,263,207 - SM_b20858 0.68 -0.6 1,263,207 - SM_b20858 0.68 -0.9 1,263,368 + +0.4 1,263,403 + -0.3 1,263,472 - +0.9 1,263,481 - +0.1 1,263,540 + -0.1 1,263,544 - -1.0 1,263,544 - +0.3 1,263,583 + -0.5 1,263,662 + +0.5 1,263,662 + +0.2 1,263,674 + +1.0 1,263,674 + +0.2 1,263,675 - +1.1 1,263,675 - -0.2 1,263,675 - -1.4 1,263,702 - +0.1 1,263,843 + +0.4 1,263,844 - +0.7 1,263,844 - +0.2 1,263,844 - -0.2 1,263,844 - -1.2 1,264,008 + SM_b20859 0.14 -0.5 1,264,008 + SM_b20859 0.14 -0.6 1,264,008 + SM_b20859 0.14 -0.4 1,264,008 + SM_b20859 0.14 +0.7 1,264,009 - SM_b20859 0.14 +0.6 1,264,009 - SM_b20859 0.14 +0.2 1,264,009 - SM_b20859 0.14 -0.1 1,264,009 - SM_b20859 0.14 +0.7 1,264,112 - SM_b20859 0.25 -0.2 1,264,112 - SM_b20859 0.25 +0.1 1,264,124 + SM_b20859 0.26 -2.1 1,264,125 - SM_b20859 0.26 -0.9 1,264,125 - SM_b20859 0.26 -0.6 1,264,191 - SM_b20859 0.33 -0.0 1,264,255 + SM_b20859 0.40 -1.0 1,264,256 - SM_b20859 0.40 +0.2 1,264,300 - SM_b20859 0.44 +0.7 1,264,300 - SM_b20859 0.44 +0.1 1,264,300 - SM_b20859 0.44 +0.0 1,264,350 + SM_b20859 0.50 -0.4 1,264,350 + SM_b20859 0.50 +1.3 1,264,350 + SM_b20859 0.50 -0.3 1,264,350 + SM_b20859 0.50 -0.5 1,264,350 + SM_b20859 0.50 -0.6 1,264,351 - SM_b20859 0.50 +0.1 1,264,351 - SM_b20859 0.50 -0.1 1,264,351 - SM_b20859 0.50 -0.4
Or see this region's nucleotide sequence