Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS32080 and RR42_RS32085 overlap by 4 nucleotides RR42_RS32085 and RR42_RS32090 are separated by 2 nucleotides
RR42_RS32080: RR42_RS32080 - filamentous hemagglutinin adhesin, at 2,574,397 to 2,582,430
_RS32080
RR42_RS32085: RR42_RS32085 - hypothetical protein, at 2,582,427 to 2,582,681
_RS32085
RR42_RS32090: RR42_RS32090 - hypothetical protein, at 2,582,684 to 2,582,902
_RS32090
Position (kb)
2582
2583 Strain fitness (log2 ratio)
-2
-1
0
1 at 2581.744 kb on + strand at 2581.745 kb on - strand at 2581.745 kb on - strand at 2581.801 kb on + strand at 2581.802 kb on - strand at 2581.805 kb on + strand at 2581.805 kb on + strand at 2581.805 kb on + strand at 2581.805 kb on + strand at 2581.805 kb on + strand at 2581.806 kb on - strand at 2581.806 kb on - strand at 2581.806 kb on - strand at 2581.806 kb on - strand at 2581.806 kb on - strand at 2581.815 kb on - strand at 2581.829 kb on + strand at 2581.856 kb on + strand at 2581.856 kb on + strand at 2581.856 kb on + strand at 2581.958 kb on + strand at 2582.004 kb on + strand at 2582.005 kb on - strand at 2582.009 kb on + strand at 2582.009 kb on + strand at 2582.268 kb on + strand at 2582.486 kb on - strand, within RR42_RS32085 at 2582.690 kb on - strand at 2582.854 kb on - strand, within RR42_RS32090 at 2582.854 kb on - strand, within RR42_RS32090 at 2582.939 kb on + strand at 2582.940 kb on - strand at 2582.948 kb on + strand at 2582.948 kb on + strand at 2582.949 kb on - strand at 2582.949 kb on - strand at 2582.950 kb on + strand at 2582.984 kb on + strand at 2582.984 kb on + strand at 2582.984 kb on + strand at 2582.984 kb on + strand at 2583.017 kb on + strand at 2583.017 kb on + strand at 2583.017 kb on + strand at 2583.018 kb on - strand at 2583.049 kb on + strand at 2583.050 kb on - strand at 2583.120 kb on + strand at 2583.120 kb on + strand at 2583.120 kb on + strand at 2583.120 kb on + strand at 2583.120 kb on + strand at 2583.121 kb on - strand at 2583.121 kb on - strand at 2583.121 kb on - strand at 2583.121 kb on - strand at 2583.195 kb on + strand at 2583.226 kb on + strand at 2583.436 kb on - strand at 2583.436 kb on - strand at 2583.436 kb on - strand at 2583.459 kb on + strand at 2583.790 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 2,581,744 + -1.2 2,581,745 - -0.1 2,581,745 - +1.4 2,581,801 + -0.4 2,581,802 - +0.1 2,581,805 + +1.5 2,581,805 + +0.6 2,581,805 + +1.1 2,581,805 + +0.1 2,581,805 + -0.0 2,581,806 - +0.0 2,581,806 - +0.4 2,581,806 - -0.6 2,581,806 - +0.9 2,581,806 - +0.3 2,581,815 - -0.2 2,581,829 + -0.4 2,581,856 + -0.7 2,581,856 + +0.4 2,581,856 + +0.3 2,581,958 + +0.7 2,582,004 + +1.0 2,582,005 - -1.0 2,582,009 + -1.8 2,582,009 + -1.4 2,582,268 + +0.1 2,582,486 - RR42_RS32085 0.23 -1.0 2,582,690 - +0.0 2,582,854 - RR42_RS32090 0.78 -0.2 2,582,854 - RR42_RS32090 0.78 -0.8 2,582,939 + -0.4 2,582,940 - -1.6 2,582,948 + -1.4 2,582,948 + +0.1 2,582,949 - -0.4 2,582,949 - -0.5 2,582,950 + -1.2 2,582,984 + -0.2 2,582,984 + +0.1 2,582,984 + +0.8 2,582,984 + +0.8 2,583,017 + -0.7 2,583,017 + +0.3 2,583,017 + +0.6 2,583,018 - +1.5 2,583,049 + +0.4 2,583,050 - +0.0 2,583,120 + +0.0 2,583,120 + -0.4 2,583,120 + +0.6 2,583,120 + +0.3 2,583,120 + -0.4 2,583,121 - +0.4 2,583,121 - +1.0 2,583,121 - +0.5 2,583,121 - -0.9 2,583,195 + -0.5 2,583,226 + -0.8 2,583,436 - +0.6 2,583,436 - -0.4 2,583,436 - -0.3 2,583,459 + +0.3 2,583,790 - +0.6
Or see this region's nucleotide sequence