Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32085

Experiment: R2A with Chlorite 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS32080 and RR42_RS32085 overlap by 4 nucleotidesRR42_RS32085 and RR42_RS32090 are separated by 2 nucleotides RR42_RS32080: RR42_RS32080 - filamentous hemagglutinin adhesin, at 2,574,397 to 2,582,430 _RS32080 RR42_RS32085: RR42_RS32085 - hypothetical protein, at 2,582,427 to 2,582,681 _RS32085 RR42_RS32090: RR42_RS32090 - hypothetical protein, at 2,582,684 to 2,582,902 _RS32090 Position (kb) 2582 2583Strain fitness (log2 ratio) -2 -1 0 1at 2581.653 kb on + strandat 2581.744 kb on + strandat 2581.745 kb on - strandat 2581.745 kb on - strandat 2581.801 kb on + strandat 2581.802 kb on - strandat 2581.805 kb on + strandat 2581.805 kb on + strandat 2581.805 kb on + strandat 2581.805 kb on + strandat 2581.805 kb on + strandat 2581.806 kb on - strandat 2581.806 kb on - strandat 2581.806 kb on - strandat 2581.806 kb on - strandat 2581.806 kb on - strandat 2581.815 kb on - strandat 2581.829 kb on + strandat 2581.856 kb on + strandat 2581.856 kb on + strandat 2581.856 kb on + strandat 2581.958 kb on + strandat 2582.004 kb on + strandat 2582.005 kb on - strandat 2582.009 kb on + strandat 2582.009 kb on + strandat 2582.268 kb on + strandat 2582.486 kb on - strand, within RR42_RS32085at 2582.690 kb on - strandat 2582.854 kb on - strand, within RR42_RS32090at 2582.854 kb on - strand, within RR42_RS32090at 2582.939 kb on + strandat 2582.940 kb on - strandat 2582.948 kb on + strandat 2582.948 kb on + strandat 2582.949 kb on - strandat 2582.949 kb on - strandat 2582.950 kb on + strandat 2582.984 kb on + strandat 2582.984 kb on + strandat 2582.984 kb on + strandat 2582.984 kb on + strandat 2583.017 kb on + strandat 2583.017 kb on + strandat 2583.017 kb on + strandat 2583.018 kb on - strandat 2583.049 kb on + strandat 2583.050 kb on - strandat 2583.120 kb on + strandat 2583.120 kb on + strandat 2583.120 kb on + strandat 2583.120 kb on + strandat 2583.120 kb on + strandat 2583.121 kb on - strandat 2583.121 kb on - strandat 2583.121 kb on - strandat 2583.121 kb on - strandat 2583.195 kb on + strandat 2583.226 kb on + strandat 2583.436 kb on - strandat 2583.436 kb on - strandat 2583.436 kb on - strandat 2583.459 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM
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2,581,653 + +0.8
2,581,744 + -1.2
2,581,745 - -0.1
2,581,745 - +1.4
2,581,801 + -0.4
2,581,802 - +0.1
2,581,805 + +1.5
2,581,805 + +0.6
2,581,805 + +1.1
2,581,805 + +0.1
2,581,805 + -0.0
2,581,806 - +0.0
2,581,806 - +0.4
2,581,806 - -0.6
2,581,806 - +0.9
2,581,806 - +0.3
2,581,815 - -0.2
2,581,829 + -0.4
2,581,856 + -0.7
2,581,856 + +0.4
2,581,856 + +0.3
2,581,958 + +0.7
2,582,004 + +1.0
2,582,005 - -1.0
2,582,009 + -1.8
2,582,009 + -1.4
2,582,268 + +0.1
2,582,486 - RR42_RS32085 0.23 -1.0
2,582,690 - +0.0
2,582,854 - RR42_RS32090 0.78 -0.2
2,582,854 - RR42_RS32090 0.78 -0.8
2,582,939 + -0.4
2,582,940 - -1.6
2,582,948 + -1.4
2,582,948 + +0.1
2,582,949 - -0.4
2,582,949 - -0.5
2,582,950 + -1.2
2,582,984 + -0.2
2,582,984 + +0.1
2,582,984 + +0.8
2,582,984 + +0.8
2,583,017 + -0.7
2,583,017 + +0.3
2,583,017 + +0.6
2,583,018 - +1.5
2,583,049 + +0.4
2,583,050 - +0.0
2,583,120 + +0.0
2,583,120 + -0.4
2,583,120 + +0.6
2,583,120 + +0.3
2,583,120 + -0.4
2,583,121 - +0.4
2,583,121 - +1.0
2,583,121 - +0.5
2,583,121 - -0.9
2,583,195 + -0.5
2,583,226 + -0.8
2,583,436 - +0.6
2,583,436 - -0.4
2,583,436 - -0.3
2,583,459 + +0.3

Or see this region's nucleotide sequence