Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS30895 and RR42_RS30900 overlap by 4 nucleotides RR42_RS30900 and RR42_RS30905 are separated by 48 nucleotides RR42_RS30905 and RR42_RS30910 overlap by 22 nucleotides RR42_RS30910 and RR42_RS30915 overlap by 13 nucleotides
RR42_RS30895: RR42_RS30895 - 4-amino-4-deoxy-L-arabinose transferase, at 2,312,928 to 2,314,700
_RS30895
RR42_RS30900: RR42_RS30900 - 4-amino-4-deoxy-L-arabinose transferase, at 2,314,697 to 2,315,068
_RS30900
RR42_RS30905: RR42_RS30905 - aminotransferase DegT, at 2,315,117 to 2,316,280
_RS30905
RR42_RS30910: RR42_RS30910 - UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, at 2,316,259 to 2,317,251
_RS30910
RR42_RS30915: RR42_RS30915 - formyltransferase, at 2,317,239 to 2,318,198
_RS30915
Position (kb) 2315
2316
2317 Strain fitness (log2 ratio) -1
0
1 at 2314.708 kb on + strand at 2314.708 kb on + strand at 2315.516 kb on + strand, within RR42_RS30905 at 2315.912 kb on + strand, within RR42_RS30905 at 2316.122 kb on + strand, within RR42_RS30905 at 2316.250 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 2,314,708 + -0.8 2,314,708 + -0.4 2,315,516 + RR42_RS30905 0.34 +0.3 2,315,912 + RR42_RS30905 0.68 +0.3 2,316,122 + RR42_RS30905 0.86 +0.1 2,316,250 + +0.2
Or see this region's nucleotide sequence