Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30575

Experiment: R2A with Chlorite 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chlorite 4 mM
2,233,184	+		RR42_RS30565	0.73	+0.1
2,233,185	-		RR42_RS30565	0.74	-0.3
2,233,217	+		RR42_RS30565	0.76	-0.5
2,233,460	+				-0.4
2,233,510	+				-1.8
2,233,511	-				-0.2
2,233,511	-				-1.6
2,233,551	+				-1.4
2,233,556	-				+1.5
2,233,556	-				-0.8
2,233,556	-				+0.2
2,233,626	+				+0.3
2,233,760	+		RR42_RS30570	0.83	+0.7
2,233,760	+		RR42_RS30570	0.83	-0.3
2,233,761	-		RR42_RS30570	0.84	-0.1
2,233,761	-		RR42_RS30570	0.84	+1.0
2,233,761	-		RR42_RS30570	0.84	+0.3
2,233,777	+				-2.0
2,233,777	+				+0.0
2,233,777	+				+0.6
2,233,777	+				+0.0
2,233,778	-				-2.0
2,233,778	-				-2.5
2,233,947	-				+0.8
2,233,947	-				-0.6
2,234,009	-				-2.5
2,234,024	-				-0.0
2,234,045	-				-0.2
2,234,045	-				+0.4
2,234,123	-				+1.0
2,234,123	-				+0.3
2,234,123	-				+0.0
2,234,245	-		RR42_RS30575	0.12	+0.6
2,234,245	-		RR42_RS30575	0.12	+0.4
2,234,258	+		RR42_RS30575	0.12	+0.1
2,234,259	-		RR42_RS30575	0.12	-1.1
2,234,444	-		RR42_RS30575	0.19	-0.4
2,234,581	+		RR42_RS30575	0.23	-0.1
2,234,581	+		RR42_RS30575	0.23	-0.5
2,234,582	-		RR42_RS30575	0.23	-0.3
2,234,582	-		RR42_RS30575	0.23	-0.1
2,234,582	-		RR42_RS30575	0.23	-0.1
2,234,582	-		RR42_RS30575	0.23	-1.0
2,234,582	-		RR42_RS30575	0.23	+0.4
2,234,653	+		RR42_RS30575	0.26	-0.2
2,234,653	+		RR42_RS30575	0.26	-1.7
2,234,667	+		RR42_RS30575	0.26	+0.8
2,234,668	-		RR42_RS30575	0.26	+0.3
2,234,668	-		RR42_RS30575	0.26	-0.1
2,234,668	-		RR42_RS30575	0.26	-0.4
2,234,740	+		RR42_RS30575	0.28	+0.0
2,234,923	+		RR42_RS30575	0.35	+0.3
2,234,948	-		RR42_RS30575	0.35	-0.2
2,234,983	+		RR42_RS30575	0.37	+0.0
2,234,983	+		RR42_RS30575	0.37	-0.4
2,234,984	-		RR42_RS30575	0.37	+1.0
2,235,046	+		RR42_RS30575	0.39	-0.4
2,235,046	+		RR42_RS30575	0.39	-0.1
2,235,214	+		RR42_RS30575	0.44	-0.5
2,235,278	-		RR42_RS30575	0.46	+0.2
2,235,356	-		RR42_RS30575	0.49	+0.5
2,235,577	+		RR42_RS30575	0.56	+0.8
2,235,577	+		RR42_RS30575	0.56	-0.5
2,235,577	+		RR42_RS30575	0.56	+0.0
2,235,577	+		RR42_RS30575	0.56	+0.8
2,235,578	-		RR42_RS30575	0.56	+0.6
2,235,697	+		RR42_RS30575	0.60	-0.8
2,235,698	-		RR42_RS30575	0.60	-1.0
2,235,698	-		RR42_RS30575	0.60	-0.5
2,235,698	-		RR42_RS30575	0.60	+0.7
2,235,718	+		RR42_RS30575	0.61	+1.0
2,235,875	+		RR42_RS30575	0.66	+0.3
2,235,876	-		RR42_RS30575	0.66	+1.0
2,235,877	+		RR42_RS30575	0.66	-0.1
2,235,877	+		RR42_RS30575	0.66	-0.4
2,235,877	+		RR42_RS30575	0.66	-2.0
2,235,877	+		RR42_RS30575	0.66	-0.7
2,235,877	+		RR42_RS30575	0.66	+0.3
2,235,877	+		RR42_RS30575	0.66	+0.0
2,235,878	-		RR42_RS30575	0.66	-0.1
2,235,878	-		RR42_RS30575	0.66	-0.2
2,235,878	-		RR42_RS30575	0.66	+1.9
2,236,208	-		RR42_RS30575	0.78	+0.1
2,236,499	+		RR42_RS30575	0.87	-0.5
2,236,500	-		RR42_RS30575	0.87	+0.9
2,236,500	-		RR42_RS30575	0.87	-0.5
2,236,714	+				+0.0
2,236,715	-				-1.0
2,236,799	-				+0.9
2,236,855	+				-0.2
2,236,866	+				-1.5
2,236,867	-				-1.0
2,236,881	+				+0.9
2,236,882	-				+0.1
2,236,882	-				+0.6
2,236,965	-				-0.0
2,237,019	+				-0.3
2,237,020	-				-1.7
2,237,020	-				-0.9
2,237,020	-				+0.0
2,237,020	-				+1.9
2,237,020	-				-1.6
2,237,026	+				-0.6
2,237,026	+				-0.1
2,237,027	-				+0.7
2,237,027	-				-0.3
2,237,027	-				-0.5
2,237,027	-				-0.2
2,237,031	+				+0.1
2,237,032	-				-0.1
2,237,032	-				+0.5
2,237,042	-				-0.4
2,237,148	+				+0.1
2,237,149	-				-0.2
2,237,176	+				+0.5
2,237,338	+		RR42_RS30580	0.12	+1.2
2,237,573	-		RR42_RS30580	0.28	-0.3
2,237,635	+		RR42_RS30580	0.32	+0.1
2,237,636	-		RR42_RS30580	0.32	-1.7
2,237,689	+		RR42_RS30580	0.35	-0.8
2,237,779	+		RR42_RS30580	0.41	-0.1
2,237,779	+		RR42_RS30580	0.41	+0.2
2,237,779	+		RR42_RS30580	0.41	-0.4
2,237,780	-		RR42_RS30580	0.41	-1.2
2,237,780	-		RR42_RS30580	0.41	+1.2
2,237,780	-		RR42_RS30580	0.41	-0.2
2,237,780	-		RR42_RS30580	0.41	-1.0
2,237,780	-		RR42_RS30580	0.41	-0.4