Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29665

Experiment: R2A with Chlorite 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chlorite 4 mM
2,021,615	-				+0.4
2,021,615	-				+0.9
2,021,689	+				-0.4
2,021,689	+				+0.4
2,021,689	+				+0.6
2,021,726	+		RR42_RS29660	0.15	-0.0
2,021,732	+		RR42_RS29660	0.15	+1.0
2,021,732	+		RR42_RS29660	0.15	+0.1
2,021,732	+		RR42_RS29660	0.15	-1.7
2,022,033	+		RR42_RS29660	0.53	-0.5
2,022,033	+		RR42_RS29660	0.53	+0.5
2,022,034	-		RR42_RS29660	0.53	+0.8
2,022,075	+		RR42_RS29660	0.58	-0.2
2,022,076	-		RR42_RS29660	0.59	-0.7
2,022,076	-		RR42_RS29660	0.59	-0.4
2,022,076	-		RR42_RS29660	0.59	+1.2
2,022,167	+		RR42_RS29660	0.70	+0.8
2,022,167	+		RR42_RS29660	0.70	-0.4
2,022,167	+		RR42_RS29660	0.70	+0.1
2,022,168	-		RR42_RS29660	0.70	+0.3
2,022,168	-		RR42_RS29660	0.70	-0.4
2,022,168	-		RR42_RS29660	0.70	-0.7
2,022,205	+		RR42_RS29660	0.75	+0.7
2,022,206	-		RR42_RS29660	0.75	+0.3
2,022,206	-		RR42_RS29660	0.75	-0.2
2,022,250	+		RR42_RS29660	0.81	-0.8
2,022,250	+		RR42_RS29660	0.81	+1.0
2,022,250	+		RR42_RS29660	0.81	-0.0
2,022,250	+		RR42_RS29660	0.81	-0.2
2,022,250	+		RR42_RS29660	0.81	+0.1
2,022,250	+		RR42_RS29660	0.81	+0.2
2,022,251	-		RR42_RS29660	0.81	+1.5
2,022,251	-		RR42_RS29660	0.81	+2.2
2,022,251	-		RR42_RS29660	0.81	+0.7
2,022,251	-		RR42_RS29660	0.81	-0.4
2,022,254	+		RR42_RS29660	0.81	-0.7
2,022,304	+		RR42_RS29660	0.87	-1.7
2,022,305	-		RR42_RS29660	0.87	-0.4
2,022,318	-		RR42_RS29660	0.89	-0.1
2,022,402	+				-1.6
2,022,403	-				-0.2
2,022,414	+				+0.3
2,022,414	+				-0.7
2,022,414	+				+0.6
2,022,468	-				+0.7
2,022,494	+				+0.6
2,022,529	+				+0.2
2,022,530	-				+0.4
2,022,607	-				+0.2
2,022,687	+		RR42_RS29665	0.27	+0.2
2,022,688	-		RR42_RS29665	0.27	-0.3
2,022,722	+		RR42_RS29665	0.35	-0.3
2,022,723	-		RR42_RS29665	0.35	-0.3
2,022,780	+		RR42_RS29665	0.49	+0.6
2,022,781	-		RR42_RS29665	0.49	+1.2
2,022,786	+		RR42_RS29665	0.50	+0.4
2,022,787	-		RR42_RS29665	0.50	-0.0
2,022,888	+		RR42_RS29665	0.75	-0.5
2,022,889	-		RR42_RS29665	0.75	+1.4
2,022,921	+		RR42_RS29665	0.82	+0.8
2,022,922	-		RR42_RS29665	0.83	+1.6
2,022,924	+		RR42_RS29665	0.83	+0.1
2,022,925	-		RR42_RS29665	0.83	-0.2
2,022,934	-		RR42_RS29665	0.85	-0.4
2,022,943	+		RR42_RS29665	0.88	-0.2
2,022,958	+				-0.7
2,022,993	-				-1.7
2,022,996	+				+1.5
2,022,996	+				-0.3
2,022,997	-				+0.2
2,022,997	-				-0.4
2,023,000	-				+0.6
2,023,022	+				-3.6
2,023,022	+				+0.9
2,023,022	+				+0.3
2,023,022	+				-0.3
2,023,023	-				-2.3
2,023,023	-				-0.2
2,023,026	+				+0.1
2,023,039	+				-0.4
2,023,040	-				+0.1
2,023,068	+				-1.0
2,023,068	+				-0.4
2,023,069	-				+0.1
2,023,069	-				-0.9
2,023,069	-				+0.0
2,023,069	-				-1.6
2,023,070	+				-0.0
2,023,071	-				+0.0
2,023,110	+				+0.3
2,023,110	+				-1.1
2,023,111	-				-0.3
2,023,129	-				-0.9
2,023,166	-				-0.4
2,023,174	-				+0.1
2,023,192	+				-0.3
2,023,193	-				-0.1
2,023,408	+				-0.8
2,023,409	-				+0.9
2,023,448	+				-0.6
2,023,448	+				+0.1
2,023,448	+				-1.5
2,023,448	+				-0.0
2,023,449	-				-0.0
2,023,449	-				+0.1
2,023,568	-		RR42_RS29670	0.10	+1.2
2,023,586	-		RR42_RS29670	0.12	-0.1
2,023,586	-		RR42_RS29670	0.12	-0.7
2,023,586	-		RR42_RS29670	0.12	-0.4
2,023,607	-		RR42_RS29670	0.14	+0.3
2,023,607	-		RR42_RS29670	0.14	+1.2
2,023,607	-		RR42_RS29670	0.14	-0.5
2,023,644	+		RR42_RS29670	0.18	-2.0
2,023,644	+		RR42_RS29670	0.18	+0.2
2,023,645	-		RR42_RS29670	0.18	+0.2
2,023,645	-		RR42_RS29670	0.18	+0.3
2,023,659	-		RR42_RS29670	0.19	-0.3
2,023,745	+		RR42_RS29670	0.27	+0.0
2,023,746	-		RR42_RS29670	0.27	-0.4
2,023,746	-		RR42_RS29670	0.27	-1.9
2,023,762	+		RR42_RS29670	0.29	-0.2
2,023,763	-		RR42_RS29670	0.29	+0.9
2,023,842	+		RR42_RS29670	0.36	+0.8
2,023,844	+		RR42_RS29670	0.36	-0.5
2,023,845	-		RR42_RS29670	0.36	-1.0
2,023,845	-		RR42_RS29670	0.36	-1.0
2,023,952	+		RR42_RS29670	0.47	-0.2
2,023,952	+		RR42_RS29670	0.47	-0.0
2,023,953	-		RR42_RS29670	0.47	-0.2
2,023,953	-		RR42_RS29670	0.47	+0.7