Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28035 and RR42_RS28040 are separated by 111 nucleotides RR42_RS28040 and RR42_RS28045 are separated by 146 nucleotides RR42_RS28045 and RR42_RS28050 overlap by 8 nucleotides
RR42_RS28035: RR42_RS28035 - ABC transporter substrate-binding protein, at 1,650,249 to 1,651,226
_RS28035
RR42_RS28040: RR42_RS28040 - acyl-CoA synthetase, at 1,651,338 to 1,653,443
_RS28040
RR42_RS28045: RR42_RS28045 - 3-oxoacyl-ACP reductase, at 1,653,590 to 1,654,339
_RS28045
RR42_RS28050: RR42_RS28050 - 3-hydroxypropionyl-CoA dehydratase, at 1,654,332 to 1,655,114
_RS28050
Position (kb) 1651
1652
1653
1654 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1650.565 kb on - strand, within RR42_RS28035 at 1650.579 kb on + strand, within RR42_RS28035 at 1650.580 kb on - strand, within RR42_RS28035 at 1650.580 kb on - strand, within RR42_RS28035 at 1650.805 kb on - strand, within RR42_RS28035 at 1651.225 kb on - strand at 1651.349 kb on + strand at 1651.434 kb on - strand at 1651.440 kb on + strand at 1651.441 kb on - strand at 1651.459 kb on - strand at 1651.459 kb on - strand at 1651.713 kb on + strand, within RR42_RS28040 at 1651.714 kb on - strand, within RR42_RS28040 at 1651.773 kb on + strand, within RR42_RS28040 at 1651.852 kb on - strand, within RR42_RS28040 at 1651.995 kb on + strand, within RR42_RS28040 at 1652.207 kb on + strand, within RR42_RS28040 at 1652.207 kb on + strand, within RR42_RS28040 at 1652.207 kb on + strand, within RR42_RS28040 at 1652.208 kb on - strand, within RR42_RS28040 at 1652.208 kb on - strand at 1652.208 kb on - strand, within RR42_RS28040 at 1652.244 kb on + strand, within RR42_RS28040 at 1652.245 kb on - strand, within RR42_RS28040 at 1652.508 kb on - strand, within RR42_RS28040 at 1652.511 kb on + strand, within RR42_RS28040 at 1652.512 kb on + strand, within RR42_RS28040 at 1653.063 kb on - strand, within RR42_RS28040 at 1653.884 kb on + strand, within RR42_RS28045 at 1654.184 kb on + strand, within RR42_RS28045 at 1654.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 1,650,565 - RR42_RS28035 0.32 -0.5 1,650,579 + RR42_RS28035 0.34 +0.3 1,650,580 - RR42_RS28035 0.34 -0.0 1,650,580 - RR42_RS28035 0.34 -0.3 1,650,805 - RR42_RS28035 0.57 -0.5 1,651,225 - +1.0 1,651,349 + +0.7 1,651,434 - +0.4 1,651,440 + -0.1 1,651,441 - -0.7 1,651,459 - -1.0 1,651,459 - +1.5 1,651,713 + RR42_RS28040 0.18 +0.4 1,651,714 - RR42_RS28040 0.18 +0.7 1,651,773 + RR42_RS28040 0.21 +2.7 1,651,852 - RR42_RS28040 0.24 -0.5 1,651,995 + RR42_RS28040 0.31 +0.0 1,652,207 + RR42_RS28040 0.41 -0.2 1,652,207 + RR42_RS28040 0.41 -0.8 1,652,207 + RR42_RS28040 0.41 -0.3 1,652,208 - RR42_RS28040 0.41 -0.8 1,652,208 - -0.6 1,652,208 - RR42_RS28040 0.41 -0.3 1,652,244 + RR42_RS28040 0.43 +0.1 1,652,245 - RR42_RS28040 0.43 -1.5 1,652,508 - RR42_RS28040 0.56 -2.1 1,652,511 + RR42_RS28040 0.56 -1.3 1,652,512 + RR42_RS28040 0.56 +0.7 1,653,063 - RR42_RS28040 0.82 -0.0 1,653,884 + RR42_RS28045 0.39 -0.2 1,654,184 + RR42_RS28045 0.79 -0.3 1,654,297 + -1.1
Or see this region's nucleotide sequence