Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26415 and RR42_RS26420 are separated by 43 nucleotides RR42_RS26420 and RR42_RS26425 are separated by 38 nucleotides RR42_RS26425 and RR42_RS26430 are separated by 14 nucleotides
RR42_RS26415: RR42_RS26415 - MarR family transcriptional regulator, at 1,283,938 to 1,284,468
_RS26415
RR42_RS26420: RR42_RS26420 - dioxygenase, at 1,284,512 to 1,285,027
_RS26420
RR42_RS26425: RR42_RS26425 - biphenyl 2,3-dioxygenase, at 1,285,066 to 1,286,355
_RS26425
RR42_RS26430: RR42_RS26430 - ferredoxin reductase, at 1,286,370 to 1,287,656
_RS26430
Position (kb) 1285
1286
1287 Strain fitness (log2 ratio) -1
0
1 at 1284.440 kb on - strand at 1284.699 kb on + strand, within RR42_RS26420 at 1284.748 kb on - strand, within RR42_RS26420 at 1284.873 kb on + strand, within RR42_RS26420 at 1284.873 kb on + strand, within RR42_RS26420 at 1284.940 kb on - strand, within RR42_RS26420 at 1285.018 kb on + strand at 1285.097 kb on + strand at 1285.097 kb on + strand at 1285.739 kb on + strand, within RR42_RS26425 at 1285.806 kb on + strand, within RR42_RS26425 at 1285.806 kb on + strand, within RR42_RS26425 at 1285.807 kb on - strand, within RR42_RS26425 at 1285.808 kb on + strand, within RR42_RS26425 at 1285.809 kb on - strand, within RR42_RS26425 at 1285.809 kb on - strand, within RR42_RS26425 at 1285.838 kb on + strand, within RR42_RS26425 at 1286.247 kb on - strand at 1286.351 kb on + strand at 1286.352 kb on - strand at 1286.352 kb on - strand at 1286.618 kb on - strand, within RR42_RS26430 at 1286.654 kb on + strand, within RR42_RS26430 at 1287.353 kb on - strand, within RR42_RS26430
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 1,284,440 - -0.3 1,284,699 + RR42_RS26420 0.36 -0.2 1,284,748 - RR42_RS26420 0.46 +0.5 1,284,873 + RR42_RS26420 0.70 -0.4 1,284,873 + RR42_RS26420 0.70 +0.2 1,284,940 - RR42_RS26420 0.83 -0.2 1,285,018 + -0.3 1,285,097 + +0.1 1,285,097 + +0.6 1,285,739 + RR42_RS26425 0.52 +0.1 1,285,806 + RR42_RS26425 0.57 +0.9 1,285,806 + RR42_RS26425 0.57 -0.4 1,285,807 - RR42_RS26425 0.57 -0.3 1,285,808 + RR42_RS26425 0.58 -1.3 1,285,809 - RR42_RS26425 0.58 -0.6 1,285,809 - RR42_RS26425 0.58 -0.1 1,285,838 + RR42_RS26425 0.60 +0.1 1,286,247 - +0.0 1,286,351 + +0.1 1,286,352 - -0.1 1,286,352 - +0.6 1,286,618 - RR42_RS26430 0.19 -0.2 1,286,654 + RR42_RS26430 0.22 -0.5 1,287,353 - RR42_RS26430 0.76 -0.1
Or see this region's nucleotide sequence