Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26110

Experiment: R2A with Chlorite 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26105 and RR42_RS26110 are separated by 23 nucleotidesRR42_RS26110 and RR42_RS26115 are separated by 114 nucleotides RR42_RS26105: RR42_RS26105 - C4-dicarboxylate transporter, at 1,206,612 to 1,208,000 _RS26105 RR42_RS26110: RR42_RS26110 - malic enzyme, at 1,208,024 to 1,210,318 _RS26110 RR42_RS26115: RR42_RS26115 - dihydrolipoamide dehydrogenase, at 1,210,433 to 1,212,202 _RS26115 Position (kb) 1208 1209 1210 1211Strain fitness (log2 ratio) -1 0 1 2at 1207.028 kb on - strand, within RR42_RS26105at 1207.186 kb on + strand, within RR42_RS26105at 1207.186 kb on + strand, within RR42_RS26105at 1207.186 kb on + strand, within RR42_RS26105at 1207.319 kb on - strand, within RR42_RS26105at 1207.870 kb on + strandat 1207.871 kb on - strandat 1207.933 kb on + strandat 1207.934 kb on - strandat 1208.202 kb on + strandat 1208.203 kb on - strandat 1208.441 kb on - strand, within RR42_RS26110at 1208.441 kb on - strand, within RR42_RS26110at 1208.625 kb on + strand, within RR42_RS26110at 1208.626 kb on - strand, within RR42_RS26110at 1208.778 kb on + strand, within RR42_RS26110at 1208.778 kb on + strand, within RR42_RS26110at 1208.779 kb on - strand, within RR42_RS26110at 1208.781 kb on + strand, within RR42_RS26110at 1208.782 kb on - strand, within RR42_RS26110at 1208.876 kb on - strand, within RR42_RS26110at 1209.076 kb on - strand, within RR42_RS26110at 1209.382 kb on - strand, within RR42_RS26110at 1209.601 kb on - strand, within RR42_RS26110at 1209.642 kb on + strand, within RR42_RS26110at 1209.642 kb on + strand, within RR42_RS26110at 1209.643 kb on - strand, within RR42_RS26110at 1209.885 kb on + strand, within RR42_RS26110at 1209.885 kb on + strand, within RR42_RS26110at 1210.578 kb on - strandat 1210.797 kb on + strand, within RR42_RS26115at 1210.830 kb on + strand, within RR42_RS26115at 1210.830 kb on + strand, within RR42_RS26115at 1210.970 kb on - strand, within RR42_RS26115at 1211.061 kb on + strand, within RR42_RS26115at 1211.061 kb on + strand, within RR42_RS26115at 1211.062 kb on - strand, within RR42_RS26115

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM
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1,207,028 - RR42_RS26105 0.30 -1.1
1,207,186 + RR42_RS26105 0.41 -0.1
1,207,186 + RR42_RS26105 0.41 -0.3
1,207,186 + RR42_RS26105 0.41 +0.1
1,207,319 - RR42_RS26105 0.51 -0.7
1,207,870 + +1.5
1,207,871 - -0.2
1,207,933 + +0.1
1,207,934 - -0.1
1,208,202 + +1.1
1,208,203 - -0.5
1,208,441 - RR42_RS26110 0.18 -1.7
1,208,441 - RR42_RS26110 0.18 +0.6
1,208,625 + RR42_RS26110 0.26 +0.6
1,208,626 - RR42_RS26110 0.26 -0.4
1,208,778 + RR42_RS26110 0.33 +0.4
1,208,778 + RR42_RS26110 0.33 +1.0
1,208,779 - RR42_RS26110 0.33 -0.5
1,208,781 + RR42_RS26110 0.33 -1.4
1,208,782 - RR42_RS26110 0.33 +0.4
1,208,876 - RR42_RS26110 0.37 -0.6
1,209,076 - RR42_RS26110 0.46 +0.0
1,209,382 - RR42_RS26110 0.59 -0.9
1,209,601 - RR42_RS26110 0.69 +0.6
1,209,642 + RR42_RS26110 0.71 +1.2
1,209,642 + RR42_RS26110 0.71 -0.1
1,209,643 - RR42_RS26110 0.71 +0.7
1,209,885 + RR42_RS26110 0.81 +2.2
1,209,885 + RR42_RS26110 0.81 +0.4
1,210,578 - -0.4
1,210,797 + RR42_RS26115 0.21 -0.4
1,210,830 + RR42_RS26115 0.22 -0.4
1,210,830 + RR42_RS26115 0.22 +1.0
1,210,970 - RR42_RS26115 0.30 +0.1
1,211,061 + RR42_RS26115 0.35 +0.8
1,211,061 + RR42_RS26115 0.35 +0.6
1,211,062 - RR42_RS26115 0.36 -0.4

Or see this region's nucleotide sequence