Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26105 and RR42_RS26110 are separated by 23 nucleotides RR42_RS26110 and RR42_RS26115 are separated by 114 nucleotides
RR42_RS26105: RR42_RS26105 - C4-dicarboxylate transporter, at 1,206,612 to 1,208,000
_RS26105
RR42_RS26110: RR42_RS26110 - malic enzyme, at 1,208,024 to 1,210,318
_RS26110
RR42_RS26115: RR42_RS26115 - dihydrolipoamide dehydrogenase, at 1,210,433 to 1,212,202
_RS26115
Position (kb)
1208
1209
1210
1211 Strain fitness (log2 ratio)
-1
0
1
2 at 1207.028 kb on - strand, within RR42_RS26105 at 1207.186 kb on + strand, within RR42_RS26105 at 1207.186 kb on + strand, within RR42_RS26105 at 1207.186 kb on + strand, within RR42_RS26105 at 1207.319 kb on - strand, within RR42_RS26105 at 1207.870 kb on + strand at 1207.871 kb on - strand at 1207.933 kb on + strand at 1207.934 kb on - strand at 1208.202 kb on + strand at 1208.203 kb on - strand at 1208.441 kb on - strand, within RR42_RS26110 at 1208.441 kb on - strand, within RR42_RS26110 at 1208.625 kb on + strand, within RR42_RS26110 at 1208.626 kb on - strand, within RR42_RS26110 at 1208.778 kb on + strand, within RR42_RS26110 at 1208.778 kb on + strand, within RR42_RS26110 at 1208.779 kb on - strand, within RR42_RS26110 at 1208.781 kb on + strand, within RR42_RS26110 at 1208.782 kb on - strand, within RR42_RS26110 at 1208.876 kb on - strand, within RR42_RS26110 at 1209.076 kb on - strand, within RR42_RS26110 at 1209.382 kb on - strand, within RR42_RS26110 at 1209.601 kb on - strand, within RR42_RS26110 at 1209.642 kb on + strand, within RR42_RS26110 at 1209.642 kb on + strand, within RR42_RS26110 at 1209.643 kb on - strand, within RR42_RS26110 at 1209.885 kb on + strand, within RR42_RS26110 at 1209.885 kb on + strand, within RR42_RS26110 at 1210.578 kb on - strand at 1210.797 kb on + strand, within RR42_RS26115 at 1210.830 kb on + strand, within RR42_RS26115 at 1210.830 kb on + strand, within RR42_RS26115 at 1210.970 kb on - strand, within RR42_RS26115 at 1211.061 kb on + strand, within RR42_RS26115 at 1211.061 kb on + strand, within RR42_RS26115 at 1211.062 kb on - strand, within RR42_RS26115
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 1,207,028 - RR42_RS26105 0.30 -1.1 1,207,186 + RR42_RS26105 0.41 -0.1 1,207,186 + RR42_RS26105 0.41 -0.3 1,207,186 + RR42_RS26105 0.41 +0.1 1,207,319 - RR42_RS26105 0.51 -0.7 1,207,870 + +1.5 1,207,871 - -0.2 1,207,933 + +0.1 1,207,934 - -0.1 1,208,202 + +1.1 1,208,203 - -0.5 1,208,441 - RR42_RS26110 0.18 -1.7 1,208,441 - RR42_RS26110 0.18 +0.6 1,208,625 + RR42_RS26110 0.26 +0.6 1,208,626 - RR42_RS26110 0.26 -0.4 1,208,778 + RR42_RS26110 0.33 +0.4 1,208,778 + RR42_RS26110 0.33 +1.0 1,208,779 - RR42_RS26110 0.33 -0.5 1,208,781 + RR42_RS26110 0.33 -1.4 1,208,782 - RR42_RS26110 0.33 +0.4 1,208,876 - RR42_RS26110 0.37 -0.6 1,209,076 - RR42_RS26110 0.46 +0.0 1,209,382 - RR42_RS26110 0.59 -0.9 1,209,601 - RR42_RS26110 0.69 +0.6 1,209,642 + RR42_RS26110 0.71 +1.2 1,209,642 + RR42_RS26110 0.71 -0.1 1,209,643 - RR42_RS26110 0.71 +0.7 1,209,885 + RR42_RS26110 0.81 +2.2 1,209,885 + RR42_RS26110 0.81 +0.4 1,210,578 - -0.4 1,210,797 + RR42_RS26115 0.21 -0.4 1,210,830 + RR42_RS26115 0.22 -0.4 1,210,830 + RR42_RS26115 0.22 +1.0 1,210,970 - RR42_RS26115 0.30 +0.1 1,211,061 + RR42_RS26115 0.35 +0.8 1,211,061 + RR42_RS26115 0.35 +0.6 1,211,062 - RR42_RS26115 0.36 -0.4
Or see this region's nucleotide sequence