Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22935 and RR42_RS22940 are separated by 60 nucleotides RR42_RS22940 and RR42_RS22945 are separated by 137 nucleotides RR42_RS22945 and RR42_RS22950 are separated by 177 nucleotides
RR42_RS22935: RR42_RS22935 - metal transporter, at 479,396 to 480,613
_RS22935
RR42_RS22940: RR42_RS22940 - TetR family transcriptional regulator, at 480,674 to 481,348
_RS22940
RR42_RS22945: RR42_RS22945 - oxidoreductase, at 481,486 to 482,514
_RS22945
RR42_RS22950: RR42_RS22950 - cytochrome C550, at 482,692 to 483,549
_RS22950
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 480.661 kb on + strand at 480.819 kb on - strand, within RR42_RS22940 at 481.130 kb on - strand, within RR42_RS22940 at 481.182 kb on + strand, within RR42_RS22940 at 481.183 kb on - strand, within RR42_RS22940 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.735 kb on + strand, within RR42_RS22945 at 481.736 kb on - strand, within RR42_RS22945 at 481.810 kb on + strand, within RR42_RS22945 at 481.811 kb on - strand, within RR42_RS22945 at 481.924 kb on + strand, within RR42_RS22945 at 481.924 kb on + strand, within RR42_RS22945 at 481.924 kb on + strand, within RR42_RS22945 at 481.924 kb on + strand, within RR42_RS22945 at 481.925 kb on - strand, within RR42_RS22945 at 481.927 kb on + strand, within RR42_RS22945 at 481.928 kb on - strand, within RR42_RS22945 at 482.205 kb on + strand, within RR42_RS22945 at 482.205 kb on + strand, within RR42_RS22945 at 482.205 kb on + strand, within RR42_RS22945 at 482.206 kb on - strand, within RR42_RS22945 at 482.206 kb on - strand, within RR42_RS22945 at 482.317 kb on + strand, within RR42_RS22945 at 482.400 kb on + strand, within RR42_RS22945 at 482.400 kb on + strand, within RR42_RS22945 at 482.400 kb on + strand, within RR42_RS22945 at 482.426 kb on + strand at 482.427 kb on - strand at 482.591 kb on + strand at 482.592 kb on - strand at 482.646 kb on + strand at 482.647 kb on - strand at 482.679 kb on + strand at 482.680 kb on - strand at 482.710 kb on + strand at 482.772 kb on + strand at 482.773 kb on - strand at 482.773 kb on - strand at 482.791 kb on + strand, within RR42_RS22950 at 482.792 kb on - strand, within RR42_RS22950 at 482.792 kb on - strand, within RR42_RS22950 at 482.792 kb on - strand, within RR42_RS22950 at 482.809 kb on + strand, within RR42_RS22950 at 482.809 kb on + strand, within RR42_RS22950 at 482.809 kb on + strand, within RR42_RS22950 at 482.962 kb on + strand, within RR42_RS22950 at 482.962 kb on + strand, within RR42_RS22950 at 482.962 kb on + strand, within RR42_RS22950 at 482.962 kb on + strand, within RR42_RS22950 at 482.963 kb on - strand, within RR42_RS22950 at 482.963 kb on - strand, within RR42_RS22950 at 483.352 kb on - strand, within RR42_RS22950 at 483.352 kb on - strand, within RR42_RS22950
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 480,661 + -0.5 480,819 - RR42_RS22940 0.21 -0.5 481,130 - RR42_RS22940 0.68 +0.3 481,182 + RR42_RS22940 0.75 +1.1 481,183 - RR42_RS22940 0.75 -0.1 481,735 + RR42_RS22945 0.24 +0.4 481,735 + RR42_RS22945 0.24 +1.1 481,735 + RR42_RS22945 0.24 -2.5 481,735 + RR42_RS22945 0.24 +0.3 481,735 + RR42_RS22945 0.24 +0.0 481,735 + RR42_RS22945 0.24 +1.1 481,736 - RR42_RS22945 0.24 +0.3 481,810 + RR42_RS22945 0.31 -0.5 481,811 - RR42_RS22945 0.32 -0.0 481,924 + RR42_RS22945 0.43 -0.2 481,924 + RR42_RS22945 0.43 +0.5 481,924 + RR42_RS22945 0.43 +0.0 481,924 + RR42_RS22945 0.43 +0.4 481,925 - RR42_RS22945 0.43 +0.7 481,927 + RR42_RS22945 0.43 +0.7 481,928 - RR42_RS22945 0.43 +0.4 482,205 + RR42_RS22945 0.70 -0.6 482,205 + RR42_RS22945 0.70 +0.0 482,205 + RR42_RS22945 0.70 -0.1 482,206 - RR42_RS22945 0.70 -0.2 482,206 - RR42_RS22945 0.70 +1.0 482,317 + RR42_RS22945 0.81 +1.4 482,400 + RR42_RS22945 0.89 +0.9 482,400 + RR42_RS22945 0.89 +0.1 482,400 + RR42_RS22945 0.89 -0.1 482,426 + -0.4 482,427 - -0.1 482,591 + +0.5 482,592 - -1.9 482,646 + -0.3 482,647 - +2.0 482,679 + +0.8 482,680 - +1.7 482,710 + +2.4 482,772 + +0.7 482,773 - -1.3 482,773 - +0.3 482,791 + RR42_RS22950 0.12 +1.7 482,792 - RR42_RS22950 0.12 -0.1 482,792 - RR42_RS22950 0.12 +2.1 482,792 - RR42_RS22950 0.12 +0.7 482,809 + RR42_RS22950 0.14 +0.6 482,809 + RR42_RS22950 0.14 +2.5 482,809 + RR42_RS22950 0.14 +3.1 482,962 + RR42_RS22950 0.31 +1.2 482,962 + RR42_RS22950 0.31 +1.2 482,962 + RR42_RS22950 0.31 +1.3 482,962 + RR42_RS22950 0.31 +0.9 482,963 - RR42_RS22950 0.32 -0.6 482,963 - RR42_RS22950 0.32 +1.2 483,352 - RR42_RS22950 0.77 +0.8 483,352 - RR42_RS22950 0.77 +0.5
Or see this region's nucleotide sequence