Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22900 and RR42_RS22905 are separated by 81 nucleotides RR42_RS22905 and RR42_RS22910 are separated by 14 nucleotides RR42_RS22910 and RR42_RS22915 are separated by 4 nucleotides
RR42_RS22900: RR42_RS22900 - 5-oxoprolinase, at 470,081 to 471,814
_RS22900
RR42_RS22905: RR42_RS22905 - myristoyl transferase, at 471,896 to 472,885
_RS22905
RR42_RS22910: RR42_RS22910 - nitrate ABC transporter ATPase, at 472,900 to 473,673
_RS22910
RR42_RS22915: RR42_RS22915 - ABC transporter permease, at 473,678 to 474,517
_RS22915
Position (kb) 471
472
473 Strain fitness (log2 ratio) -1
0
1
2 at 470.939 kb on + strand, within RR42_RS22900 at 470.940 kb on - strand, within RR42_RS22900 at 470.957 kb on + strand, within RR42_RS22900 at 470.957 kb on + strand, within RR42_RS22900 at 470.958 kb on - strand, within RR42_RS22900 at 470.958 kb on - strand, within RR42_RS22900 at 471.221 kb on + strand, within RR42_RS22900 at 471.221 kb on + strand, within RR42_RS22900 at 471.221 kb on + strand, within RR42_RS22900 at 471.221 kb on + strand, within RR42_RS22900 at 471.221 kb on + strand, within RR42_RS22900 at 471.222 kb on - strand, within RR42_RS22900 at 471.365 kb on + strand, within RR42_RS22900 at 471.366 kb on - strand, within RR42_RS22900 at 471.616 kb on + strand, within RR42_RS22900 at 471.725 kb on + strand at 471.725 kb on + strand at 471.725 kb on + strand at 471.816 kb on - strand at 472.001 kb on + strand, within RR42_RS22905 at 472.378 kb on + strand, within RR42_RS22905 at 472.535 kb on + strand, within RR42_RS22905 at 472.628 kb on + strand, within RR42_RS22905 at 472.629 kb on - strand, within RR42_RS22905 at 472.629 kb on - strand, within RR42_RS22905 at 472.629 kb on - strand, within RR42_RS22905 at 472.724 kb on + strand, within RR42_RS22905 at 472.725 kb on - strand, within RR42_RS22905 at 472.856 kb on + strand at 472.856 kb on + strand at 472.857 kb on - strand at 472.857 kb on - strand at 472.859 kb on + strand at 472.859 kb on + strand at 472.884 kb on - strand at 472.897 kb on + strand at 472.897 kb on + strand at 472.898 kb on - strand at 472.898 kb on - strand at 472.898 kb on - strand at 472.898 kb on - strand at 472.940 kb on - strand at 473.195 kb on + strand, within RR42_RS22910 at 473.196 kb on - strand, within RR42_RS22910 at 473.354 kb on + strand, within RR42_RS22910 at 473.355 kb on - strand, within RR42_RS22910 at 473.500 kb on + strand, within RR42_RS22910 at 473.500 kb on + strand, within RR42_RS22910 at 473.501 kb on - strand, within RR42_RS22910 at 473.501 kb on - strand, within RR42_RS22910 at 473.621 kb on - strand at 473.621 kb on - strand at 473.662 kb on + strand at 473.663 kb on - strand at 473.688 kb on + strand at 473.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 470,939 + RR42_RS22900 0.49 -1.0 470,940 - RR42_RS22900 0.50 +0.1 470,957 + RR42_RS22900 0.51 +1.1 470,957 + RR42_RS22900 0.51 -0.2 470,958 - RR42_RS22900 0.51 -0.4 470,958 - RR42_RS22900 0.51 -0.0 471,221 + RR42_RS22900 0.66 +0.0 471,221 + RR42_RS22900 0.66 -0.9 471,221 + RR42_RS22900 0.66 +0.0 471,221 + RR42_RS22900 0.66 +0.8 471,221 + RR42_RS22900 0.66 -1.4 471,222 - RR42_RS22900 0.66 +0.2 471,365 + RR42_RS22900 0.74 -0.0 471,366 - RR42_RS22900 0.74 -1.1 471,616 + RR42_RS22900 0.89 -0.7 471,725 + -1.2 471,725 + +0.3 471,725 + +0.7 471,816 - +0.4 472,001 + RR42_RS22905 0.11 -1.1 472,378 + RR42_RS22905 0.49 -0.9 472,535 + RR42_RS22905 0.65 +0.6 472,628 + RR42_RS22905 0.74 -0.1 472,629 - RR42_RS22905 0.74 +1.5 472,629 - RR42_RS22905 0.74 -0.2 472,629 - RR42_RS22905 0.74 -1.0 472,724 + RR42_RS22905 0.84 -0.6 472,725 - RR42_RS22905 0.84 -0.6 472,856 + -0.3 472,856 + +0.7 472,857 - -0.4 472,857 - +1.0 472,859 + +0.1 472,859 + -0.6 472,884 - -0.2 472,897 + +0.2 472,897 + +0.1 472,898 - -0.9 472,898 - -1.2 472,898 - +1.2 472,898 - +0.4 472,940 - -0.0 473,195 + RR42_RS22910 0.38 +0.1 473,196 - RR42_RS22910 0.38 +0.4 473,354 + RR42_RS22910 0.59 -1.1 473,355 - RR42_RS22910 0.59 +0.1 473,500 + RR42_RS22910 0.78 +0.1 473,500 + RR42_RS22910 0.78 +0.0 473,501 - RR42_RS22910 0.78 +0.0 473,501 - RR42_RS22910 0.78 -0.6 473,621 - -0.2 473,621 - +0.5 473,662 + -0.5 473,663 - +0.0 473,688 + -0.2 473,689 - +1.8
Or see this region's nucleotide sequence