Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21935 and RR42_RS21940 are separated by 164 nucleotides RR42_RS21940 and RR42_RS21945 are separated by 290 nucleotides
RR42_RS21935: RR42_RS21935 - 4-hydroxybenzoate transporter, at 246,261 to 247,601
_RS21935
RR42_RS21940: RR42_RS21940 - 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) <small>(from data)</small>, at 247,766 to 248,935
_RS21940
RR42_RS21945: RR42_RS21945 - hypothetical protein, at 249,226 to 249,516
_RS21945
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1
2 at 246.799 kb on + strand, within RR42_RS21935 at 246.799 kb on + strand, within RR42_RS21935 at 246.823 kb on + strand, within RR42_RS21935 at 246.823 kb on + strand, within RR42_RS21935 at 246.823 kb on + strand, within RR42_RS21935 at 246.823 kb on + strand, within RR42_RS21935 at 246.824 kb on - strand, within RR42_RS21935 at 246.824 kb on - strand, within RR42_RS21935 at 246.939 kb on + strand, within RR42_RS21935 at 246.939 kb on + strand, within RR42_RS21935 at 246.940 kb on - strand, within RR42_RS21935 at 247.096 kb on + strand, within RR42_RS21935 at 247.148 kb on + strand, within RR42_RS21935 at 247.149 kb on - strand, within RR42_RS21935 at 247.201 kb on + strand, within RR42_RS21935 at 247.484 kb on + strand at 247.684 kb on + strand at 247.771 kb on - strand at 247.786 kb on - strand at 247.786 kb on - strand at 247.786 kb on - strand at 247.956 kb on + strand, within RR42_RS21940 at 247.957 kb on - strand, within RR42_RS21940 at 248.016 kb on + strand, within RR42_RS21940 at 248.016 kb on + strand, within RR42_RS21940 at 248.017 kb on - strand, within RR42_RS21940 at 248.017 kb on - strand, within RR42_RS21940 at 248.192 kb on - strand, within RR42_RS21940 at 248.194 kb on + strand, within RR42_RS21940 at 248.274 kb on + strand, within RR42_RS21940 at 248.277 kb on + strand, within RR42_RS21940 at 248.277 kb on + strand, within RR42_RS21940 at 248.278 kb on - strand, within RR42_RS21940 at 248.337 kb on + strand, within RR42_RS21940 at 248.337 kb on + strand, within RR42_RS21940 at 248.338 kb on - strand, within RR42_RS21940 at 248.338 kb on - strand, within RR42_RS21940 at 248.397 kb on + strand, within RR42_RS21940 at 248.497 kb on - strand, within RR42_RS21940 at 248.574 kb on + strand, within RR42_RS21940 at 248.575 kb on - strand, within RR42_RS21940 at 248.640 kb on + strand, within RR42_RS21940 at 248.701 kb on - strand, within RR42_RS21940 at 248.701 kb on - strand, within RR42_RS21940 at 248.823 kb on + strand at 248.824 kb on - strand at 248.824 kb on - strand at 248.885 kb on + strand at 248.968 kb on - strand at 248.977 kb on - strand at 248.989 kb on + strand at 248.989 kb on + strand at 248.989 kb on + strand at 248.990 kb on - strand at 248.995 kb on + strand at 249.379 kb on + strand, within RR42_RS21945 at 249.380 kb on - strand, within RR42_RS21945 at 249.512 kb on + strand at 249.512 kb on + strand at 249.512 kb on + strand at 249.513 kb on - strand at 249.513 kb on - strand at 249.598 kb on + strand at 249.855 kb on + strand at 249.855 kb on + strand at 249.856 kb on - strand at 249.924 kb on + strand at 249.924 kb on + strand at 249.924 kb on + strand at 249.925 kb on - strand at 249.925 kb on - strand at 249.925 kb on - strand at 249.925 kb on - strand at 249.925 kb on - strand at 249.925 kb on - strand at 249.925 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 246,799 + RR42_RS21935 0.40 +0.1 246,799 + RR42_RS21935 0.40 +0.7 246,823 + RR42_RS21935 0.42 -0.5 246,823 + RR42_RS21935 0.42 -0.3 246,823 + RR42_RS21935 0.42 -1.3 246,823 + RR42_RS21935 0.42 +0.4 246,824 - RR42_RS21935 0.42 -1.3 246,824 - RR42_RS21935 0.42 +0.3 246,939 + RR42_RS21935 0.51 +1.7 246,939 + RR42_RS21935 0.51 +0.2 246,940 - RR42_RS21935 0.51 -0.1 247,096 + RR42_RS21935 0.62 -0.3 247,148 + RR42_RS21935 0.66 -0.6 247,149 - RR42_RS21935 0.66 -0.3 247,201 + RR42_RS21935 0.70 -0.3 247,484 + +0.0 247,684 + +0.5 247,771 - -0.4 247,786 - -0.9 247,786 - +0.8 247,786 - -1.0 247,956 + RR42_RS21940 0.16 +1.5 247,957 - RR42_RS21940 0.16 -0.4 248,016 + RR42_RS21940 0.21 +2.0 248,016 + RR42_RS21940 0.21 +0.1 248,017 - RR42_RS21940 0.21 +0.8 248,017 - RR42_RS21940 0.21 +0.6 248,192 - RR42_RS21940 0.36 -0.5 248,194 + RR42_RS21940 0.37 -1.2 248,274 + RR42_RS21940 0.43 -0.8 248,277 + RR42_RS21940 0.44 -0.2 248,277 + RR42_RS21940 0.44 -0.1 248,278 - RR42_RS21940 0.44 +0.4 248,337 + RR42_RS21940 0.49 -0.1 248,337 + RR42_RS21940 0.49 -1.7 248,338 - RR42_RS21940 0.49 -1.2 248,338 - RR42_RS21940 0.49 -0.1 248,397 + RR42_RS21940 0.54 +0.6 248,497 - RR42_RS21940 0.62 -1.1 248,574 + RR42_RS21940 0.69 -1.5 248,575 - RR42_RS21940 0.69 +0.0 248,640 + RR42_RS21940 0.75 -0.6 248,701 - RR42_RS21940 0.80 -0.6 248,701 - RR42_RS21940 0.80 -0.7 248,823 + +1.2 248,824 - +0.3 248,824 - +0.7 248,885 + -1.0 248,968 - -0.8 248,977 - -0.3 248,989 + -0.0 248,989 + -1.0 248,989 + +1.1 248,990 - +0.2 248,995 + -0.2 249,379 + RR42_RS21945 0.53 -0.3 249,380 - RR42_RS21945 0.53 +0.5 249,512 + -0.9 249,512 + +0.6 249,512 + -0.3 249,513 - -0.3 249,513 - -1.3 249,598 + +1.3 249,855 + -1.0 249,855 + -0.3 249,856 - +1.2 249,924 + -0.3 249,924 + +0.0 249,924 + -1.1 249,925 - -2.0 249,925 - -0.1 249,925 - -0.3 249,925 - -0.2 249,925 - -1.2 249,925 - -0.2 249,925 - -0.9
Or see this region's nucleotide sequence