Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20355 and RR42_RS20360 are separated by 88 nucleotides RR42_RS20360 and RR42_RS20365 are separated by 306 nucleotides RR42_RS20365 and RR42_RS20370 are separated by 156 nucleotides RR42_RS20370 and RR42_RS20375 are separated by 144 nucleotides
RR42_RS20355: RR42_RS20355 - alpha-2-macroglobulin, at 4,403,820 to 4,409,840
_RS20355
RR42_RS20360: RR42_RS20360 - AsnC family transcriptional regulator, at 4,409,929 to 4,410,408
_RS20360
RR42_RS20365: RR42_RS20365 - phenylalanine 4-monooxygenase (EC 1.14.16.1) <small>(from data)</small>, at 4,410,715 to 4,411,647
_RS20365
RR42_RS20370: RR42_RS20370 - pterin-4-alpha-carbinolamine dehydratase, at 4,411,804 to 4,412,121
_RS20370
RR42_RS20375: RR42_RS20375 - transcriptional regulator, at 4,412,266 to 4,412,970
_RS20375
Position (kb) 4410
4411
4412 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4410.083 kb on + strand, within RR42_RS20360 at 4410.107 kb on + strand, within RR42_RS20360 at 4410.512 kb on + strand at 4410.513 kb on - strand at 4410.521 kb on + strand at 4410.592 kb on + strand at 4410.720 kb on + strand at 4410.860 kb on - strand, within RR42_RS20365 at 4410.862 kb on - strand, within RR42_RS20365 at 4410.862 kb on - strand, within RR42_RS20365 at 4410.895 kb on + strand, within RR42_RS20365 at 4410.896 kb on - strand, within RR42_RS20365 at 4410.896 kb on - strand, within RR42_RS20365 at 4411.216 kb on + strand, within RR42_RS20365 at 4411.216 kb on + strand, within RR42_RS20365 at 4411.216 kb on + strand, within RR42_RS20365 at 4411.216 kb on + strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.217 kb on - strand, within RR42_RS20365 at 4411.294 kb on + strand, within RR42_RS20365 at 4411.295 kb on - strand, within RR42_RS20365 at 4411.342 kb on + strand, within RR42_RS20365 at 4411.381 kb on + strand, within RR42_RS20365 at 4411.382 kb on - strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.474 kb on + strand, within RR42_RS20365 at 4411.475 kb on - strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.537 kb on + strand, within RR42_RS20365 at 4411.538 kb on - strand, within RR42_RS20365 at 4411.829 kb on + strand at 4411.915 kb on - strand, within RR42_RS20370 at 4412.008 kb on + strand, within RR42_RS20370 at 4412.159 kb on - strand at 4412.194 kb on + strand at 4412.271 kb on + strand at 4412.271 kb on + strand at 4412.557 kb on + strand, within RR42_RS20375 at 4412.558 kb on - strand, within RR42_RS20375 at 4412.606 kb on + strand, within RR42_RS20375 at 4412.607 kb on - strand, within RR42_RS20375
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 4,410,083 + RR42_RS20360 0.32 +0.8 4,410,107 + RR42_RS20360 0.37 +0.0 4,410,512 + +1.3 4,410,513 - -1.2 4,410,521 + -1.2 4,410,592 + +0.3 4,410,720 + -1.2 4,410,860 - RR42_RS20365 0.16 -0.7 4,410,862 - RR42_RS20365 0.16 +0.0 4,410,862 - RR42_RS20365 0.16 +0.8 4,410,895 + RR42_RS20365 0.19 -2.5 4,410,896 - RR42_RS20365 0.19 -2.4 4,410,896 - RR42_RS20365 0.19 -0.7 4,411,216 + RR42_RS20365 0.54 -1.3 4,411,216 + RR42_RS20365 0.54 -1.8 4,411,216 + RR42_RS20365 0.54 -1.4 4,411,216 + RR42_RS20365 0.54 +0.7 4,411,217 - RR42_RS20365 0.54 +0.3 4,411,217 - RR42_RS20365 0.54 -1.4 4,411,217 - RR42_RS20365 0.54 -1.6 4,411,217 - RR42_RS20365 0.54 -2.6 4,411,217 - RR42_RS20365 0.54 -1.3 4,411,294 + RR42_RS20365 0.62 -1.3 4,411,295 - RR42_RS20365 0.62 -1.5 4,411,342 + RR42_RS20365 0.67 -1.8 4,411,381 + RR42_RS20365 0.71 -1.2 4,411,382 - RR42_RS20365 0.71 -2.9 4,411,474 + RR42_RS20365 0.81 -1.7 4,411,474 + RR42_RS20365 0.81 -1.2 4,411,474 + RR42_RS20365 0.81 -2.1 4,411,474 + RR42_RS20365 0.81 -0.2 4,411,475 - RR42_RS20365 0.81 +0.2 4,411,537 + RR42_RS20365 0.88 -3.1 4,411,537 + RR42_RS20365 0.88 -1.6 4,411,537 + RR42_RS20365 0.88 -1.3 4,411,538 - RR42_RS20365 0.88 -2.0 4,411,829 + -1.1 4,411,915 - RR42_RS20370 0.35 -2.1 4,412,008 + RR42_RS20370 0.64 +1.3 4,412,159 - -1.7 4,412,194 + +0.6 4,412,271 + +1.5 4,412,271 + +0.8 4,412,557 + RR42_RS20375 0.41 -0.2 4,412,558 - RR42_RS20375 0.41 +0.2 4,412,606 + RR42_RS20375 0.48 +1.0 4,412,607 - RR42_RS20375 0.48 +0.9
Or see this region's nucleotide sequence