Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19780

Experiment: R2A with Chlorite 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chlorite 4 mM
4,267,163	+				-1.5
4,267,163	+				+0.5
4,267,164	-				-0.2
4,267,164	-				-1.4
4,267,180	-				-1.1
4,267,180	-				+0.8
4,267,180	-				-0.3
4,267,180	-				+2.6
4,267,184	+				-0.3
4,267,184	+				+0.6
4,267,185	-				+0.7
4,267,247	+				+1.9
4,267,247	+				-0.8
4,267,247	+				+0.0
4,267,248	-				-0.5
4,267,248	-				-1.2
4,267,248	-				+0.3
4,267,287	+				-0.8
4,267,287	+				-0.1
4,267,287	+				-0.4
4,267,288	-				+0.1
4,267,460	+		RR42_RS19775	0.22	+2.1
4,267,460	+		RR42_RS19775	0.22	+0.5
4,267,461	-		RR42_RS19775	0.22	-0.4
4,267,461	-		RR42_RS19775	0.22	-0.7
4,267,601	+		RR42_RS19775	0.44	-0.4
4,267,601	+		RR42_RS19775	0.44	-0.7
4,267,607	+		RR42_RS19775	0.45	+0.2
4,267,625	-		RR42_RS19775	0.48	-0.1
4,267,625	-		RR42_RS19775	0.48	-0.2
4,267,625	-		RR42_RS19775	0.48	-1.5
4,267,664	+		RR42_RS19775	0.54	-0.1
4,267,664	+		RR42_RS19775	0.54	+0.2
4,267,664	+		RR42_RS19775	0.54	-0.1
4,267,665	-		RR42_RS19775	0.54	-0.8
4,267,665	-		RR42_RS19775	0.54	-0.3
4,267,666	+		RR42_RS19775	0.55	+0.8
4,267,666	+		RR42_RS19775	0.55	-0.1
4,267,666	+		RR42_RS19775	0.55	-0.1
4,267,667	-		RR42_RS19775	0.55	-0.4
4,267,765	-		RR42_RS19775	0.70	+0.6
4,267,765	-		RR42_RS19775	0.70	-0.8
4,267,952	+				+0.2
4,267,952	+				-1.5
4,267,952	+				-1.7
4,267,952	+				+0.2
4,267,953	-				-0.2
4,267,953	-				+0.1
4,268,040	+				+0.0
4,268,040	+				+0.2
4,268,040	+				-1.1
4,268,042	+				-0.2
4,268,042	+				+0.7
4,268,126	+				-0.1
4,268,126	+				+0.1
4,268,274	+				+0.5
4,268,274	+				+1.0
4,268,275	-				+0.9
4,268,275	-				-0.6
4,268,275	-				-0.5
4,268,304	+		RR42_RS19780	0.12	-0.2
4,268,304	+		RR42_RS19780	0.12	-0.4
4,268,305	-		RR42_RS19780	0.12	+0.4
4,268,305	-		RR42_RS19780	0.12	+0.2
4,268,322	+		RR42_RS19780	0.14	-0.3
4,268,683	-		RR42_RS19780	0.42	+0.5
4,268,683	-		RR42_RS19780	0.42	+0.4
4,268,814	+		RR42_RS19780	0.52	+0.7
4,268,815	-		RR42_RS19780	0.52	+0.1
4,268,815	-		RR42_RS19780	0.52	-1.1
4,268,838	+		RR42_RS19780	0.54	-0.5
4,268,838	+		RR42_RS19780	0.54	-0.5
4,268,839	-		RR42_RS19780	0.54	-0.5
4,268,907	+		RR42_RS19780	0.60	-0.6
4,268,907	+		RR42_RS19780	0.60	+0.1
4,268,908	-		RR42_RS19780	0.60	+0.0
4,268,982	+		RR42_RS19780	0.66	-0.6
4,268,983	-		RR42_RS19780	0.66	-0.4
4,268,983	-		RR42_RS19780	0.66	-0.6
4,268,988	+		RR42_RS19780	0.66	+0.2
4,268,988	+		RR42_RS19780	0.66	-0.4
4,268,989	-		RR42_RS19780	0.66	-0.6
4,269,030	+		RR42_RS19780	0.69	+1.9
4,269,030	+		RR42_RS19780	0.69	+0.1
4,269,030	+		RR42_RS19780	0.69	+0.0
4,269,030	+		RR42_RS19780	0.69	-0.2
4,269,031	-		RR42_RS19780	0.69	-0.7
4,269,031	-		RR42_RS19780	0.69	-0.8
4,269,031	-		RR42_RS19780	0.69	+0.0
4,269,369	+				-0.7
4,269,369	+				-0.5
4,269,370	-				+0.2
4,269,464	+				-1.7
4,269,903	+		RR42_RS19785	0.35	-0.5
4,269,904	-		RR42_RS19785	0.35	+0.0
4,270,062	+		RR42_RS19785	0.47	+0.5
4,270,063	-		RR42_RS19785	0.47	+1.8