Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19650 and RR42_RS19655 are separated by 773 nucleotides RR42_RS19655 and RR42_RS19660 are separated by 40 nucleotides RR42_RS19660 and RR42_RS19665 are separated by 78 nucleotides RR42_RS19665 and RR42_RS19670 are separated by 36 nucleotides
RR42_RS19650: RR42_RS19650 - sulfate transporter, at 4,247,399 to 4,247,836
_RS19650
RR42_RS19655: RR42_RS19655 - tRNA-Ala, at 4,248,610 to 4,248,685
_RS19655
RR42_RS19660: RR42_RS19660 - 5'-nucleotidase, at 4,248,726 to 4,250,447
_RS19660
RR42_RS19665: RR42_RS19665 - alkyl hydroperoxide reductase, at 4,250,526 to 4,251,023
_RS19665
RR42_RS19670: RR42_RS19670 - SoxX protein, at 4,251,060 to 4,251,719
_RS19670
Position (kb) 4248
4249
4250
4251 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4247.824 kb on + strand at 4247.824 kb on + strand at 4247.824 kb on + strand at 4247.824 kb on + strand at 4247.824 kb on + strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.825 kb on - strand at 4247.836 kb on + strand at 4247.836 kb on + strand at 4247.837 kb on - strand at 4247.837 kb on - strand at 4247.837 kb on - strand at 4247.837 kb on - strand at 4247.854 kb on + strand at 4247.854 kb on + strand at 4247.854 kb on + strand at 4247.854 kb on + strand at 4247.855 kb on - strand at 4247.855 kb on - strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.927 kb on + strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.928 kb on - strand at 4247.957 kb on - strand at 4247.957 kb on - strand at 4247.981 kb on + strand at 4247.981 kb on + strand at 4247.982 kb on - strand at 4247.999 kb on + strand at 4248.099 kb on - strand at 4248.099 kb on - strand at 4248.126 kb on - strand at 4248.126 kb on - strand at 4248.264 kb on + strand at 4248.264 kb on + strand at 4248.264 kb on + strand at 4248.264 kb on + strand at 4248.265 kb on - strand at 4248.265 kb on - strand at 4248.265 kb on - strand at 4248.298 kb on + strand at 4248.677 kb on + strand, within RR42_RS19655 at 4248.700 kb on + strand at 4248.700 kb on + strand at 4248.700 kb on + strand at 4248.701 kb on - strand at 4248.888 kb on + strand at 4248.895 kb on + strand at 4248.896 kb on - strand at 4248.979 kb on + strand, within RR42_RS19660 at 4248.979 kb on + strand, within RR42_RS19660 at 4248.979 kb on + strand, within RR42_RS19660 at 4248.979 kb on + strand, within RR42_RS19660 at 4248.980 kb on - strand, within RR42_RS19660 at 4248.980 kb on - strand, within RR42_RS19660 at 4248.980 kb on - strand, within RR42_RS19660 at 4248.980 kb on - strand, within RR42_RS19660 at 4248.980 kb on - strand, within RR42_RS19660 at 4248.980 kb on - strand, within RR42_RS19660 at 4248.980 kb on - strand, within RR42_RS19660 at 4249.021 kb on + strand, within RR42_RS19660 at 4249.021 kb on + strand, within RR42_RS19660 at 4249.021 kb on + strand, within RR42_RS19660 at 4249.021 kb on + strand, within RR42_RS19660 at 4249.022 kb on - strand, within RR42_RS19660 at 4249.022 kb on - strand, within RR42_RS19660 at 4249.025 kb on - strand, within RR42_RS19660 at 4249.025 kb on - strand, within RR42_RS19660 at 4249.114 kb on + strand, within RR42_RS19660 at 4249.115 kb on - strand, within RR42_RS19660 at 4249.115 kb on - strand, within RR42_RS19660 at 4249.115 kb on - strand, within RR42_RS19660 at 4249.227 kb on + strand, within RR42_RS19660 at 4249.284 kb on + strand, within RR42_RS19660 at 4249.285 kb on - strand, within RR42_RS19660 at 4249.285 kb on - strand, within RR42_RS19660 at 4249.285 kb on - strand, within RR42_RS19660 at 4249.285 kb on - strand, within RR42_RS19660 at 4249.330 kb on + strand, within RR42_RS19660 at 4249.384 kb on + strand, within RR42_RS19660 at 4249.385 kb on - strand, within RR42_RS19660 at 4249.747 kb on + strand, within RR42_RS19660 at 4249.747 kb on + strand, within RR42_RS19660 at 4249.747 kb on + strand, within RR42_RS19660 at 4249.748 kb on - strand, within RR42_RS19660 at 4249.805 kb on - strand, within RR42_RS19660 at 4249.805 kb on - strand, within RR42_RS19660 at 4249.805 kb on - strand, within RR42_RS19660 at 4249.805 kb on - strand, within RR42_RS19660 at 4250.143 kb on + strand, within RR42_RS19660 at 4250.143 kb on + strand, within RR42_RS19660 at 4250.143 kb on + strand, within RR42_RS19660 at 4250.345 kb on - strand at 4250.527 kb on + strand at 4250.527 kb on + strand at 4250.629 kb on + strand, within RR42_RS19665 at 4250.629 kb on + strand, within RR42_RS19665 at 4250.630 kb on - strand, within RR42_RS19665 at 4250.630 kb on - strand, within RR42_RS19665 at 4250.704 kb on + strand, within RR42_RS19665 at 4250.704 kb on + strand, within RR42_RS19665 at 4250.704 kb on + strand, within RR42_RS19665 at 4250.705 kb on - strand, within RR42_RS19665 at 4250.722 kb on + strand, within RR42_RS19665 at 4250.722 kb on + strand, within RR42_RS19665 at 4250.722 kb on + strand, within RR42_RS19665 at 4250.723 kb on - strand, within RR42_RS19665 at 4250.723 kb on - strand, within RR42_RS19665 at 4250.952 kb on + strand, within RR42_RS19665 at 4251.205 kb on + strand, within RR42_RS19670 at 4251.206 kb on - strand, within RR42_RS19670 at 4251.250 kb on + strand, within RR42_RS19670 at 4251.251 kb on - strand, within RR42_RS19670 at 4251.251 kb on - strand, within RR42_RS19670 at 4251.310 kb on + strand, within RR42_RS19670 at 4251.310 kb on + strand, within RR42_RS19670 at 4251.310 kb on + strand, within RR42_RS19670 at 4251.311 kb on - strand, within RR42_RS19670 at 4251.311 kb on - strand, within RR42_RS19670 at 4251.311 kb on - strand, within RR42_RS19670 at 4251.311 kb on - strand, within RR42_RS19670
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 4,247,824 + -0.1 4,247,824 + -1.3 4,247,824 + +0.7 4,247,824 + +0.0 4,247,824 + +0.2 4,247,825 - -1.8 4,247,825 - -0.0 4,247,825 - -0.1 4,247,825 - -0.5 4,247,825 - -0.2 4,247,825 - +0.1 4,247,825 - -0.7 4,247,825 - +3.1 4,247,825 - +0.6 4,247,825 - +0.0 4,247,825 - +0.3 4,247,825 - +0.5 4,247,836 + -0.1 4,247,836 + -0.7 4,247,837 - -0.7 4,247,837 - +0.1 4,247,837 - -1.3 4,247,837 - +0.4 4,247,854 + +0.3 4,247,854 + -0.7 4,247,854 + +1.7 4,247,854 + +0.3 4,247,855 - +0.2 4,247,855 - +0.7 4,247,927 + -0.3 4,247,927 + -0.6 4,247,927 + -2.0 4,247,927 + -0.8 4,247,927 + -0.9 4,247,927 + -1.2 4,247,928 - -0.3 4,247,928 - -0.2 4,247,928 - -0.5 4,247,928 - +0.4 4,247,928 - -0.2 4,247,928 - -0.0 4,247,928 - -0.7 4,247,928 - -0.6 4,247,928 - +1.9 4,247,957 - +0.5 4,247,957 - +0.2 4,247,981 + +0.3 4,247,981 + -0.4 4,247,982 - +1.1 4,247,999 + +0.5 4,248,099 - +0.3 4,248,099 - -1.1 4,248,126 - -1.0 4,248,126 - -0.5 4,248,264 + +1.2 4,248,264 + -0.9 4,248,264 + -0.3 4,248,264 + -1.2 4,248,265 - +0.3 4,248,265 - -0.1 4,248,265 - -0.1 4,248,298 + +1.7 4,248,677 + RR42_RS19655 0.88 -0.5 4,248,700 + -1.9 4,248,700 + +0.3 4,248,700 + +0.1 4,248,701 - +0.1 4,248,888 + -1.8 4,248,895 + -0.1 4,248,896 - -0.5 4,248,979 + RR42_RS19660 0.15 +0.3 4,248,979 + RR42_RS19660 0.15 +0.3 4,248,979 + RR42_RS19660 0.15 -0.8 4,248,979 + RR42_RS19660 0.15 -0.5 4,248,980 - RR42_RS19660 0.15 +0.7 4,248,980 - RR42_RS19660 0.15 -0.4 4,248,980 - RR42_RS19660 0.15 +0.1 4,248,980 - RR42_RS19660 0.15 -0.0 4,248,980 - RR42_RS19660 0.15 +1.1 4,248,980 - RR42_RS19660 0.15 +0.5 4,248,980 - RR42_RS19660 0.15 +0.8 4,249,021 + RR42_RS19660 0.17 -0.4 4,249,021 + RR42_RS19660 0.17 +0.2 4,249,021 + RR42_RS19660 0.17 +0.8 4,249,021 + RR42_RS19660 0.17 +0.5 4,249,022 - RR42_RS19660 0.17 -1.0 4,249,022 - RR42_RS19660 0.17 +0.6 4,249,025 - RR42_RS19660 0.17 +0.2 4,249,025 - RR42_RS19660 0.17 +0.3 4,249,114 + RR42_RS19660 0.23 +0.1 4,249,115 - RR42_RS19660 0.23 +0.6 4,249,115 - RR42_RS19660 0.23 +0.1 4,249,115 - RR42_RS19660 0.23 +1.2 4,249,227 + RR42_RS19660 0.29 -0.5 4,249,284 + RR42_RS19660 0.32 +0.9 4,249,285 - RR42_RS19660 0.32 +0.5 4,249,285 - RR42_RS19660 0.32 +0.9 4,249,285 - RR42_RS19660 0.32 +0.5 4,249,285 - RR42_RS19660 0.32 +1.3 4,249,330 + RR42_RS19660 0.35 +0.8 4,249,384 + RR42_RS19660 0.38 +0.8 4,249,385 - RR42_RS19660 0.38 +0.5 4,249,747 + RR42_RS19660 0.59 +0.2 4,249,747 + RR42_RS19660 0.59 -2.4 4,249,747 + RR42_RS19660 0.59 +2.2 4,249,748 - RR42_RS19660 0.59 -0.3 4,249,805 - RR42_RS19660 0.63 +0.3 4,249,805 - RR42_RS19660 0.63 +1.4 4,249,805 - RR42_RS19660 0.63 -0.6 4,249,805 - RR42_RS19660 0.63 +1.3 4,250,143 + RR42_RS19660 0.82 -1.7 4,250,143 + RR42_RS19660 0.82 -0.2 4,250,143 + RR42_RS19660 0.82 +0.9 4,250,345 - -1.4 4,250,527 + +0.6 4,250,527 + -1.6 4,250,629 + RR42_RS19665 0.21 +0.2 4,250,629 + RR42_RS19665 0.21 -0.2 4,250,630 - RR42_RS19665 0.21 -0.7 4,250,630 - RR42_RS19665 0.21 +1.0 4,250,704 + RR42_RS19665 0.36 -0.2 4,250,704 + RR42_RS19665 0.36 +0.3 4,250,704 + RR42_RS19665 0.36 +0.2 4,250,705 - RR42_RS19665 0.36 +2.8 4,250,722 + RR42_RS19665 0.39 -0.7 4,250,722 + RR42_RS19665 0.39 -1.2 4,250,722 + RR42_RS19665 0.39 -1.1 4,250,723 - RR42_RS19665 0.40 -0.5 4,250,723 - RR42_RS19665 0.40 -1.2 4,250,952 + RR42_RS19665 0.86 -1.3 4,251,205 + RR42_RS19670 0.22 -0.9 4,251,206 - RR42_RS19670 0.22 +0.6 4,251,250 + RR42_RS19670 0.29 +0.4 4,251,251 - RR42_RS19670 0.29 -0.7 4,251,251 - RR42_RS19670 0.29 -0.3 4,251,310 + RR42_RS19670 0.38 -2.4 4,251,310 + RR42_RS19670 0.38 -0.1 4,251,310 + RR42_RS19670 0.38 +1.3 4,251,311 - RR42_RS19670 0.38 +0.1 4,251,311 - RR42_RS19670 0.38 +0.7 4,251,311 - RR42_RS19670 0.38 +0.3 4,251,311 - RR42_RS19670 0.38 -0.4
Or see this region's nucleotide sequence