Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18535

Experiment: R2A with Chlorite 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chlorite 4 mM
4,009,402	+		RR42_RS18530	0.47	-0.0
4,009,402	+		RR42_RS18530	0.47	-0.8
4,009,402	+		RR42_RS18530	0.47	+0.3
4,009,403	-		RR42_RS18530	0.47	+0.6
4,009,403	-		RR42_RS18530	0.47	-0.0
4,009,535	+		RR42_RS18530	0.56	+1.2
4,010,012	-		RR42_RS18530	0.88	+2.0
4,010,012	-		RR42_RS18530	0.88	+1.3
4,010,016	+		RR42_RS18530	0.89	-0.4
4,010,017	-		RR42_RS18530	0.89	-0.6
4,010,017	-		RR42_RS18530	0.89	-0.0
4,010,033	+		RR42_RS18530	0.90	+1.3
4,010,033	+		RR42_RS18530	0.90	-0.4
4,010,034	-		RR42_RS18530	0.90	+0.4
4,010,034	-		RR42_RS18530	0.90	+0.3
4,010,034	-		RR42_RS18530	0.90	+0.3
4,010,255	+				-0.2
4,010,255	+				-0.1
4,010,256	-				-1.0
4,010,256	-				+2.1
4,010,256	-				-0.7
4,010,257	+				+0.5
4,010,257	+				+1.1
4,010,257	+				-0.0
4,010,258	-				+0.4
4,010,377	+				-0.1
4,010,377	+				-2.3
4,010,377	+				-0.9
4,010,378	-				+0.6
4,010,716	-		RR42_RS18535	0.41	-0.2
4,010,716	-		RR42_RS18535	0.41	-0.3
4,010,716	-		RR42_RS18535	0.41	-0.6
4,010,737	+		RR42_RS18535	0.43	+0.2
4,010,825	-		RR42_RS18535	0.52	+0.8
4,010,854	+		RR42_RS18535	0.55	+0.6
4,010,855	-		RR42_RS18535	0.55	+0.9
4,010,855	-		RR42_RS18535	0.55	-0.6
4,010,977	+		RR42_RS18535	0.68	+0.1
4,011,028	+		RR42_RS18535	0.73	-1.1
4,011,028	+		RR42_RS18535	0.73	-1.2
4,011,029	-		RR42_RS18535	0.73	-0.5
4,011,176	+		RR42_RS18535	0.88	+0.6
4,011,176	+		RR42_RS18535	0.88	-0.9
4,011,176	+		RR42_RS18535	0.88	-1.5
4,011,177	-		RR42_RS18535	0.88	-0.1
4,011,178	+		RR42_RS18535	0.88	+0.3
4,011,178	+		RR42_RS18535	0.88	-0.5
4,011,178	+		RR42_RS18535	0.88	+0.5
4,011,212	-				-0.4
4,011,284	+				+0.5
4,011,284	+				+0.3
4,011,285	-				-1.6
4,011,285	-				+0.2
4,011,296	-				-1.0
4,011,296	-				-1.3
4,011,296	-				-0.2
4,011,407	+				-0.3
4,011,408	-				+1.4
4,011,591	-		RR42_RS18540	0.14	+0.4
4,011,671	+		RR42_RS18540	0.19	+0.3
4,011,671	+		RR42_RS18540	0.19	+1.1
4,011,671	+		RR42_RS18540	0.19	+0.4
4,011,728	+		RR42_RS18540	0.23	-0.7
4,011,747	-		RR42_RS18540	0.24	+0.0
4,011,815	+		RR42_RS18540	0.29	-0.8
4,011,815	+		RR42_RS18540	0.29	-1.9
4,011,848	+		RR42_RS18540	0.31	-0.8
4,011,848	+		RR42_RS18540	0.31	-1.9
4,011,848	+		RR42_RS18540	0.31	+0.4
4,011,849	-		RR42_RS18540	0.31	+1.3
4,011,849	-		RR42_RS18540	0.31	+0.6
4,011,849	-		RR42_RS18540	0.31	+0.4
4,011,976	-		RR42_RS18540	0.40	+0.7
4,012,001	+		RR42_RS18540	0.41	+0.4
4,012,001	+		RR42_RS18540	0.41	-0.1
4,012,001	+		RR42_RS18540	0.41	+0.1
4,012,001	+		RR42_RS18540	0.41	-0.7
4,012,002	-		RR42_RS18540	0.41	-1.5
4,012,002	-		RR42_RS18540	0.41	-0.1
4,012,002	-		RR42_RS18540	0.41	-0.7
4,012,148	+		RR42_RS18540	0.51	-0.1
4,012,148	+		RR42_RS18540	0.51	+0.5
4,012,148	+		RR42_RS18540	0.51	-1.6
4,012,148	+		RR42_RS18540	0.51	-0.8
4,012,148	+		RR42_RS18540	0.51	-0.6
4,012,148	+		RR42_RS18540	0.51	-0.4
4,012,148	+		RR42_RS18540	0.51	-0.1
4,012,148	+		RR42_RS18540	0.51	+0.3
4,012,148	+		RR42_RS18540	0.51	-1.5
4,012,148	+		RR42_RS18540	0.51	-1.2
4,012,149	-		RR42_RS18540	0.51	+0.0
4,012,149	-		RR42_RS18540	0.51	-0.1
4,012,149	-		RR42_RS18540	0.51	+2.0
4,012,149	-		RR42_RS18540	0.51	-0.3
4,012,149	-		RR42_RS18540	0.51	+0.1
4,012,149	-		RR42_RS18540	0.51	-1.0
4,012,149	-		RR42_RS18540	0.51	+1.9
4,012,149	-		RR42_RS18540	0.51	-0.3
4,012,149	-		RR42_RS18540	0.51	+0.4
4,012,166	+		RR42_RS18540	0.52	+0.3
4,012,167	-		RR42_RS18540	0.52	-2.2
4,012,167	-		RR42_RS18540	0.52	+0.5
4,012,167	-		RR42_RS18540	0.52	-0.7
4,012,192	+		RR42_RS18540	0.54	+0.3
4,012,193	-		RR42_RS18540	0.54	+0.7