Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15170 and RR42_RS15175 are separated by 317 nucleotides RR42_RS15175 and RR42_RS15180 are separated by 12 nucleotides RR42_RS15180 and RR42_RS15185 are separated by 445 nucleotides
RR42_RS15170: RR42_RS15170 - peptidase, at 3,284,390 to 3,286,120
_RS15170
RR42_RS15175: RR42_RS15175 - membrane protein, at 3,286,438 to 3,286,899
_RS15175
RR42_RS15180: RR42_RS15180 - hypothetical protein, at 3,286,912 to 3,288,414
_RS15180
RR42_RS15185: RR42_RS15185 - LysR family transcriptional regulator, at 3,288,860 to 3,289,777
_RS15185
Position (kb)
3286
3287
3288
3289 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3285.956 kb on - strand at 3286.005 kb on - strand at 3286.219 kb on + strand at 3286.219 kb on + strand at 3286.267 kb on + strand at 3286.276 kb on - strand at 3286.313 kb on + strand at 3286.313 kb on + strand at 3286.334 kb on - strand at 3286.522 kb on + strand, within RR42_RS15175 at 3286.898 kb on - strand at 3286.911 kb on + strand at 3286.912 kb on - strand at 3286.919 kb on + strand at 3286.919 kb on + strand at 3286.919 kb on + strand at 3286.920 kb on - strand at 3286.922 kb on + strand at 3286.922 kb on + strand at 3286.923 kb on - strand at 3286.976 kb on - strand at 3287.203 kb on + strand, within RR42_RS15180 at 3287.746 kb on + strand, within RR42_RS15180 at 3288.121 kb on + strand, within RR42_RS15180 at 3288.181 kb on + strand, within RR42_RS15180 at 3288.412 kb on + strand at 3288.412 kb on + strand at 3288.412 kb on + strand at 3288.412 kb on + strand at 3288.412 kb on + strand at 3288.439 kb on - strand at 3288.662 kb on + strand at 3288.662 kb on + strand at 3288.828 kb on + strand at 3289.294 kb on - strand, within RR42_RS15185
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 3,285,956 - -1.5 3,286,005 - -0.4 3,286,219 + -0.0 3,286,219 + +3.2 3,286,267 + -0.5 3,286,276 - +1.2 3,286,313 + -1.1 3,286,313 + +2.2 3,286,334 - +1.0 3,286,522 + RR42_RS15175 0.18 -1.0 3,286,898 - -0.1 3,286,911 + +0.2 3,286,912 - +0.7 3,286,919 + +0.6 3,286,919 + -0.3 3,286,919 + +1.1 3,286,920 - +1.2 3,286,922 + +0.2 3,286,922 + +0.5 3,286,923 - -0.3 3,286,976 - +0.9 3,287,203 + RR42_RS15180 0.19 +1.0 3,287,746 + RR42_RS15180 0.55 +0.3 3,288,121 + RR42_RS15180 0.80 +0.4 3,288,181 + RR42_RS15180 0.84 -1.2 3,288,412 + +0.7 3,288,412 + +0.4 3,288,412 + -1.0 3,288,412 + -0.2 3,288,412 + -0.1 3,288,439 - +0.4 3,288,662 + -0.1 3,288,662 + -0.3 3,288,828 + +0.1 3,289,294 - RR42_RS15185 0.47 +0.5
Or see this region's nucleotide sequence