Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06810 and RR42_RS06815 are separated by 204 nucleotides RR42_RS06815 and RR42_RS06820 overlap by 1 nucleotides RR42_RS06820 and RR42_RS06825 are separated by 224 nucleotides
RR42_RS06810: RR42_RS06810 - hypothetical protein, at 1,474,365 to 1,474,643
_RS06810
RR42_RS06815: RR42_RS06815 - hypothetical protein, at 1,474,848 to 1,475,423
_RS06815
RR42_RS06820: RR42_RS06820 - hypothetical protein, at 1,475,423 to 1,475,674
_RS06820
RR42_RS06825: RR42_RS06825 - hypothetical protein, at 1,475,899 to 1,476,567
_RS06825
Position (kb) 1475
1476 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1474.518 kb on + strand, within RR42_RS06810 at 1474.628 kb on - strand at 1474.628 kb on - strand at 1474.660 kb on - strand at 1474.724 kb on - strand at 1474.733 kb on + strand at 1474.908 kb on + strand, within RR42_RS06815 at 1474.993 kb on - strand, within RR42_RS06815 at 1475.063 kb on + strand, within RR42_RS06815 at 1475.063 kb on + strand, within RR42_RS06815 at 1475.063 kb on + strand, within RR42_RS06815 at 1475.296 kb on + strand, within RR42_RS06815 at 1475.296 kb on + strand, within RR42_RS06815 at 1475.296 kb on + strand, within RR42_RS06815 at 1475.296 kb on + strand, within RR42_RS06815 at 1475.296 kb on + strand, within RR42_RS06815 at 1475.322 kb on + strand, within RR42_RS06815 at 1475.463 kb on + strand, within RR42_RS06820 at 1475.466 kb on + strand, within RR42_RS06820 at 1475.466 kb on + strand, within RR42_RS06820 at 1475.466 kb on + strand, within RR42_RS06820 at 1475.466 kb on + strand, within RR42_RS06820 at 1475.467 kb on - strand, within RR42_RS06820 at 1475.569 kb on - strand, within RR42_RS06820 at 1475.754 kb on + strand at 1475.755 kb on - strand at 1475.881 kb on - strand at 1475.898 kb on + strand at 1475.898 kb on + strand at 1475.899 kb on - strand at 1475.950 kb on + strand at 1475.982 kb on + strand, within RR42_RS06825 at 1475.983 kb on - strand, within RR42_RS06825 at 1475.983 kb on - strand, within RR42_RS06825 at 1476.045 kb on - strand, within RR42_RS06825 at 1476.045 kb on - strand, within RR42_RS06825 at 1476.054 kb on + strand, within RR42_RS06825 at 1476.103 kb on - strand, within RR42_RS06825 at 1476.103 kb on - strand, within RR42_RS06825 at 1476.230 kb on - strand, within RR42_RS06825 at 1476.230 kb on - strand, within RR42_RS06825 at 1476.230 kb on - strand, within RR42_RS06825 at 1476.230 kb on - strand, within RR42_RS06825 at 1476.230 kb on - strand, within RR42_RS06825 at 1476.454 kb on + strand, within RR42_RS06825 at 1476.454 kb on + strand, within RR42_RS06825 at 1476.454 kb on + strand, within RR42_RS06825 at 1476.454 kb on + strand, within RR42_RS06825 at 1476.484 kb on - strand, within RR42_RS06825 at 1476.547 kb on + strand at 1476.607 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 1,474,518 + RR42_RS06810 0.55 +0.4 1,474,628 - +0.9 1,474,628 - -0.7 1,474,660 - -0.1 1,474,724 - -1.9 1,474,733 + -0.1 1,474,908 + RR42_RS06815 0.10 -0.2 1,474,993 - RR42_RS06815 0.25 +0.0 1,475,063 + RR42_RS06815 0.37 -0.4 1,475,063 + RR42_RS06815 0.37 +0.3 1,475,063 + RR42_RS06815 0.37 +0.1 1,475,296 + RR42_RS06815 0.78 -1.3 1,475,296 + RR42_RS06815 0.78 +1.1 1,475,296 + RR42_RS06815 0.78 -0.5 1,475,296 + RR42_RS06815 0.78 -0.0 1,475,296 + RR42_RS06815 0.78 +0.7 1,475,322 + RR42_RS06815 0.82 -1.3 1,475,463 + RR42_RS06820 0.16 +0.8 1,475,466 + RR42_RS06820 0.17 -0.6 1,475,466 + RR42_RS06820 0.17 +0.2 1,475,466 + RR42_RS06820 0.17 +3.1 1,475,466 + RR42_RS06820 0.17 +1.5 1,475,467 - RR42_RS06820 0.17 +0.5 1,475,569 - RR42_RS06820 0.58 -1.9 1,475,754 + +0.1 1,475,755 - +0.7 1,475,881 - -1.4 1,475,898 + -0.1 1,475,898 + +0.3 1,475,899 - -1.8 1,475,950 + -0.3 1,475,982 + RR42_RS06825 0.12 +0.3 1,475,983 - RR42_RS06825 0.13 -1.1 1,475,983 - RR42_RS06825 0.13 +0.3 1,476,045 - RR42_RS06825 0.22 -1.5 1,476,045 - RR42_RS06825 0.22 -1.0 1,476,054 + RR42_RS06825 0.23 -1.9 1,476,103 - RR42_RS06825 0.30 -0.6 1,476,103 - RR42_RS06825 0.30 +0.5 1,476,230 - RR42_RS06825 0.49 -0.5 1,476,230 - RR42_RS06825 0.49 -2.2 1,476,230 - RR42_RS06825 0.49 +0.6 1,476,230 - RR42_RS06825 0.49 +0.3 1,476,230 - RR42_RS06825 0.49 -0.4 1,476,454 + RR42_RS06825 0.83 -0.2 1,476,454 + RR42_RS06825 0.83 +1.1 1,476,454 + RR42_RS06825 0.83 -0.4 1,476,454 + RR42_RS06825 0.83 -0.4 1,476,484 - RR42_RS06825 0.87 +0.9 1,476,547 + +0.7 1,476,607 + +0.1
Or see this region's nucleotide sequence