Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04195

Experiment: R2A with Chlorite 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04195 and RR42_RS04200 are separated by 67 nucleotides RR42_RS04195: RR42_RS04195 - membrane protein, at 928,564 to 929,661 _RS04195 RR42_RS04200: RR42_RS04200 - peptidase M48, at 929,729 to 930,889 _RS04200 Position (kb) 928 929 930Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 927.583 kb on - strandat 927.651 kb on - strandat 927.680 kb on + strandat 927.793 kb on - strandat 927.854 kb on + strandat 927.854 kb on + strandat 927.854 kb on + strandat 927.854 kb on + strandat 927.855 kb on - strandat 927.855 kb on - strandat 927.855 kb on - strandat 927.934 kb on - strandat 927.975 kb on - strandat 928.128 kb on - strandat 928.128 kb on - strandat 928.130 kb on + strandat 928.130 kb on + strandat 928.130 kb on + strandat 928.131 kb on - strandat 928.131 kb on - strandat 928.131 kb on - strandat 928.131 kb on - strandat 928.131 kb on - strandat 928.131 kb on - strandat 928.131 kb on - strandat 928.131 kb on - strandat 928.157 kb on + strandat 928.158 kb on - strandat 928.171 kb on + strandat 928.172 kb on - strandat 928.225 kb on + strandat 928.225 kb on + strandat 928.225 kb on + strandat 928.255 kb on + strandat 928.255 kb on + strandat 928.256 kb on - strandat 928.256 kb on - strandat 928.256 kb on - strandat 928.293 kb on + strandat 928.294 kb on - strandat 928.334 kb on - strandat 928.341 kb on + strandat 928.342 kb on - strandat 928.432 kb on - strandat 928.457 kb on + strandat 928.457 kb on + strandat 928.457 kb on + strandat 928.457 kb on + strandat 928.457 kb on + strandat 928.458 kb on - strandat 928.571 kb on + strandat 928.600 kb on + strandat 928.600 kb on + strandat 928.601 kb on - strandat 928.601 kb on - strandat 928.601 kb on - strandat 928.601 kb on - strandat 928.686 kb on + strand, within RR42_RS04195at 928.686 kb on + strand, within RR42_RS04195at 928.687 kb on - strand, within RR42_RS04195at 928.687 kb on - strand, within RR42_RS04195at 928.687 kb on - strand, within RR42_RS04195at 928.687 kb on - strand, within RR42_RS04195at 928.687 kb on - strand, within RR42_RS04195at 928.717 kb on + strand, within RR42_RS04195at 928.717 kb on + strand, within RR42_RS04195at 928.717 kb on + strand, within RR42_RS04195at 928.717 kb on + strand, within RR42_RS04195at 928.718 kb on - strand, within RR42_RS04195at 928.718 kb on - strand, within RR42_RS04195at 928.750 kb on + strand, within RR42_RS04195at 928.751 kb on - strand, within RR42_RS04195at 928.751 kb on - strand, within RR42_RS04195at 928.757 kb on - strand, within RR42_RS04195at 928.793 kb on - strand, within RR42_RS04195at 928.873 kb on - strand, within RR42_RS04195at 928.973 kb on - strand, within RR42_RS04195at 928.973 kb on - strand, within RR42_RS04195at 929.017 kb on + strand, within RR42_RS04195at 929.017 kb on + strand, within RR42_RS04195at 929.017 kb on + strand, within RR42_RS04195at 929.017 kb on + strand, within RR42_RS04195at 929.017 kb on + strand, within RR42_RS04195at 929.018 kb on - strand, within RR42_RS04195at 929.062 kb on + strand, within RR42_RS04195at 929.062 kb on + strand, within RR42_RS04195at 929.062 kb on + strand, within RR42_RS04195at 929.062 kb on + strand, within RR42_RS04195at 929.102 kb on - strand, within RR42_RS04195at 929.102 kb on - strand, within RR42_RS04195at 929.167 kb on + strand, within RR42_RS04195at 929.168 kb on - strand, within RR42_RS04195at 929.168 kb on - strand, within RR42_RS04195at 929.168 kb on - strand, within RR42_RS04195at 929.176 kb on + strand, within RR42_RS04195at 929.454 kb on + strand, within RR42_RS04195at 929.455 kb on - strand, within RR42_RS04195at 929.455 kb on - strand, within RR42_RS04195at 929.455 kb on - strand, within RR42_RS04195at 929.538 kb on + strand, within RR42_RS04195at 929.638 kb on + strandat 929.639 kb on - strandat 929.639 kb on - strandat 929.674 kb on + strandat 929.675 kb on - strandat 929.768 kb on + strandat 930.086 kb on + strand, within RR42_RS04200at 930.092 kb on + strand, within RR42_RS04200at 930.092 kb on + strand, within RR42_RS04200at 930.093 kb on - strand, within RR42_RS04200at 930.509 kb on + strand, within RR42_RS04200at 930.590 kb on + strand, within RR42_RS04200at 930.591 kb on - strand, within RR42_RS04200

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM
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927,583 - -0.2
927,651 - -0.5
927,680 + -0.0
927,793 - -0.7
927,854 + +0.2
927,854 + -0.5
927,854 + +0.7
927,854 + -0.3
927,855 - +1.1
927,855 - -0.1
927,855 - -0.1
927,934 - +3.1
927,975 - -0.9
928,128 - +0.2
928,128 - +0.3
928,130 + +0.2
928,130 + -1.1
928,130 + +0.4
928,131 - -2.1
928,131 - -3.0
928,131 - -0.3
928,131 - -0.2
928,131 - -0.4
928,131 - +0.9
928,131 - +0.1
928,131 - +0.1
928,157 + +1.9
928,158 - -0.1
928,171 + +0.9
928,172 - -0.0
928,225 + +0.4
928,225 + -0.0
928,225 + -0.3
928,255 + +1.3
928,255 + +1.1
928,256 - +1.1
928,256 - -0.1
928,256 - +0.0
928,293 + -0.1
928,294 - -0.7
928,334 - +0.0
928,341 + +0.9
928,342 - -0.9
928,432 - -0.5
928,457 + -0.4
928,457 + -1.3
928,457 + -0.5
928,457 + -0.6
928,457 + +0.5
928,458 - -1.5
928,571 + +0.6
928,600 + -0.7
928,600 + +1.0
928,601 - -0.2
928,601 - +0.8
928,601 - -0.0
928,601 - -0.7
928,686 + RR42_RS04195 0.11 -1.1
928,686 + RR42_RS04195 0.11 -0.3
928,687 - RR42_RS04195 0.11 -1.8
928,687 - RR42_RS04195 0.11 -0.7
928,687 - RR42_RS04195 0.11 -0.7
928,687 - RR42_RS04195 0.11 -0.5
928,687 - RR42_RS04195 0.11 -1.1
928,717 + RR42_RS04195 0.14 +1.1
928,717 + RR42_RS04195 0.14 +1.4
928,717 + RR42_RS04195 0.14 +0.4
928,717 + RR42_RS04195 0.14 -1.9
928,718 - RR42_RS04195 0.14 -1.7
928,718 - RR42_RS04195 0.14 +0.5
928,750 + RR42_RS04195 0.17 -0.1
928,751 - RR42_RS04195 0.17 -0.4
928,751 - RR42_RS04195 0.17 -0.2
928,757 - RR42_RS04195 0.18 -2.2
928,793 - RR42_RS04195 0.21 -0.2
928,873 - RR42_RS04195 0.28 -0.8
928,973 - RR42_RS04195 0.37 -1.4
928,973 - RR42_RS04195 0.37 -0.2
929,017 + RR42_RS04195 0.41 +1.0
929,017 + RR42_RS04195 0.41 -1.9
929,017 + RR42_RS04195 0.41 -1.0
929,017 + RR42_RS04195 0.41 +1.5
929,017 + RR42_RS04195 0.41 -1.2
929,018 - RR42_RS04195 0.41 +0.1
929,062 + RR42_RS04195 0.45 -1.1
929,062 + RR42_RS04195 0.45 -0.6
929,062 + RR42_RS04195 0.45 -0.1
929,062 + RR42_RS04195 0.45 -0.9
929,102 - RR42_RS04195 0.49 -0.1
929,102 - RR42_RS04195 0.49 -0.0
929,167 + RR42_RS04195 0.55 -0.6
929,168 - RR42_RS04195 0.55 +0.4
929,168 - RR42_RS04195 0.55 +0.1
929,168 - RR42_RS04195 0.55 +0.4
929,176 + RR42_RS04195 0.56 -0.9
929,454 + RR42_RS04195 0.81 +0.8
929,455 - RR42_RS04195 0.81 -0.1
929,455 - RR42_RS04195 0.81 +0.1
929,455 - RR42_RS04195 0.81 +1.1
929,538 + RR42_RS04195 0.89 +0.1
929,638 + -0.0
929,639 - -1.7
929,639 - -0.0
929,674 + -0.5
929,675 - +0.1
929,768 + -0.5
930,086 + RR42_RS04200 0.31 +0.1
930,092 + RR42_RS04200 0.31 +0.1
930,092 + RR42_RS04200 0.31 +0.2
930,093 - RR42_RS04200 0.31 -0.6
930,509 + RR42_RS04200 0.67 -0.1
930,590 + RR42_RS04200 0.74 +1.1
930,591 - RR42_RS04200 0.74 +0.5

Or see this region's nucleotide sequence