Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03855 and RR42_RS03860 are separated by 324 nucleotides RR42_RS03860 and RR42_RS03865 are separated by 93 nucleotides
RR42_RS03855: RR42_RS03855 - MFS transporter, at 851,532 to 852,515
_RS03855
RR42_RS03860: RR42_RS03860 - transcriptional regulator, at 852,840 to 853,919
_RS03860
RR42_RS03865: RR42_RS03865 - hydroxyacid dehydrogenase, at 854,013 to 854,954
_RS03865
Position (kb) 852
853
854 Strain fitness (log2 ratio) -1
0
1
2 at 851.953 kb on + strand, within RR42_RS03855 at 852.117 kb on + strand, within RR42_RS03855 at 852.178 kb on + strand, within RR42_RS03855 at 852.244 kb on + strand, within RR42_RS03855 at 852.244 kb on + strand, within RR42_RS03855 at 852.244 kb on + strand, within RR42_RS03855 at 852.271 kb on + strand, within RR42_RS03855 at 852.284 kb on + strand, within RR42_RS03855 at 852.406 kb on + strand, within RR42_RS03855 at 852.406 kb on + strand, within RR42_RS03855 at 852.407 kb on - strand, within RR42_RS03855 at 852.562 kb on - strand at 852.562 kb on - strand at 852.562 kb on - strand at 852.562 kb on - strand at 852.565 kb on + strand at 852.566 kb on - strand at 852.566 kb on - strand at 852.566 kb on - strand at 852.566 kb on - strand at 852.566 kb on - strand at 852.568 kb on + strand at 852.568 kb on + strand at 852.569 kb on - strand at 852.569 kb on - strand at 852.569 kb on - strand at 852.607 kb on + strand at 852.608 kb on - strand at 852.608 kb on - strand at 853.068 kb on + strand, within RR42_RS03860 at 853.069 kb on - strand, within RR42_RS03860 at 853.069 kb on - strand, within RR42_RS03860 at 853.076 kb on + strand, within RR42_RS03860 at 853.203 kb on + strand, within RR42_RS03860 at 853.769 kb on + strand, within RR42_RS03860 at 853.769 kb on + strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.770 kb on - strand, within RR42_RS03860 at 853.774 kb on - strand, within RR42_RS03860 at 853.963 kb on + strand at 854.031 kb on - strand at 854.083 kb on - strand at 854.245 kb on - strand, within RR42_RS03865 at 854.245 kb on - strand, within RR42_RS03865 at 854.651 kb on - strand, within RR42_RS03865 at 854.836 kb on + strand, within RR42_RS03865 at 854.836 kb on + strand, within RR42_RS03865 at 854.837 kb on - strand, within RR42_RS03865
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 851,953 + RR42_RS03855 0.43 -1.2 852,117 + RR42_RS03855 0.59 -0.8 852,178 + RR42_RS03855 0.66 +0.5 852,244 + RR42_RS03855 0.72 +0.2 852,244 + RR42_RS03855 0.72 +1.2 852,244 + RR42_RS03855 0.72 +0.5 852,271 + RR42_RS03855 0.75 +1.3 852,284 + RR42_RS03855 0.76 -0.3 852,406 + RR42_RS03855 0.89 +1.0 852,406 + RR42_RS03855 0.89 +0.1 852,407 - RR42_RS03855 0.89 -0.3 852,562 - -0.4 852,562 - +0.5 852,562 - -1.0 852,562 - +0.0 852,565 + +0.7 852,566 - +1.0 852,566 - +1.2 852,566 - +1.2 852,566 - +1.2 852,566 - +1.1 852,568 + +0.6 852,568 + +0.3 852,569 - +0.2 852,569 - -1.3 852,569 - -0.0 852,607 + +0.6 852,608 - -0.0 852,608 - +1.2 853,068 + RR42_RS03860 0.21 -0.1 853,069 - RR42_RS03860 0.21 -1.3 853,069 - RR42_RS03860 0.21 -0.5 853,076 + RR42_RS03860 0.22 -0.2 853,203 + RR42_RS03860 0.34 -1.2 853,769 + RR42_RS03860 0.86 -1.2 853,769 + RR42_RS03860 0.86 -1.5 853,770 - RR42_RS03860 0.86 +0.4 853,770 - RR42_RS03860 0.86 +0.3 853,770 - RR42_RS03860 0.86 -1.2 853,774 - RR42_RS03860 0.86 +0.3 853,963 + +1.5 854,031 - +0.8 854,083 - -0.3 854,245 - RR42_RS03865 0.25 -0.2 854,245 - RR42_RS03865 0.25 +0.3 854,651 - RR42_RS03865 0.68 +0.5 854,836 + RR42_RS03865 0.87 +1.9 854,836 + RR42_RS03865 0.87 +0.4 854,837 - RR42_RS03865 0.87 -0.0
Or see this region's nucleotide sequence