Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03450 and RR42_RS03455 are separated by 12 nucleotides RR42_RS03455 and RR42_RS03460 overlap by 20 nucleotides RR42_RS03460 and RR42_RS03465 are separated by 207 nucleotides RR42_RS03465 and RR42_RS03470 are separated by 6 nucleotides
RR42_RS03450: RR42_RS03450 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 766,793 to 767,602
_RS03450
RR42_RS03455: RR42_RS03455 - hypothetical protein, at 767,615 to 767,803
_RS03455
RR42_RS03460: RR42_RS03460 - tetraacyldisaccharide 4'-kinase, at 767,784 to 768,893
_RS03460
RR42_RS03465: RR42_RS03465 - biopolymer transporter ExbD, at 769,101 to 769,529
_RS03465
RR42_RS03470: RR42_RS03470 - flagellar motor protein MotA, at 769,536 to 770,156
_RS03470
Position (kb) 767
768
769 Strain fitness (log2 ratio) -1
0
1
2 at 768.903 kb on - strand at 768.903 kb on - strand at 769.047 kb on - strand at 769.318 kb on + strand, within RR42_RS03465 at 769.318 kb on + strand, within RR42_RS03465 at 769.319 kb on - strand, within RR42_RS03465 at 769.319 kb on - strand, within RR42_RS03465 at 769.413 kb on - strand, within RR42_RS03465 at 769.424 kb on - strand, within RR42_RS03465 at 769.534 kb on + strand at 769.535 kb on - strand at 769.535 kb on - strand at 769.603 kb on + strand, within RR42_RS03470 at 769.603 kb on + strand, within RR42_RS03470 at 769.603 kb on + strand, within RR42_RS03470 at 769.604 kb on - strand, within RR42_RS03470 at 769.604 kb on - strand, within RR42_RS03470 at 769.604 kb on - strand, within RR42_RS03470 at 769.604 kb on - strand, within RR42_RS03470 at 769.627 kb on + strand, within RR42_RS03470 at 769.628 kb on - strand, within RR42_RS03470 at 769.679 kb on + strand, within RR42_RS03470 at 769.679 kb on + strand, within RR42_RS03470 at 769.680 kb on - strand, within RR42_RS03470 at 769.680 kb on - strand, within RR42_RS03470 at 769.681 kb on + strand, within RR42_RS03470 at 769.682 kb on - strand, within RR42_RS03470 at 769.682 kb on - strand, within RR42_RS03470 at 769.682 kb on - strand, within RR42_RS03470 at 769.682 kb on - strand, within RR42_RS03470 at 769.682 kb on - strand, within RR42_RS03470
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 768,903 - -0.2 768,903 - +1.0 769,047 - +0.8 769,318 + RR42_RS03465 0.51 -0.2 769,318 + RR42_RS03465 0.51 -0.6 769,319 - RR42_RS03465 0.51 +0.6 769,319 - RR42_RS03465 0.51 +2.6 769,413 - RR42_RS03465 0.73 +0.4 769,424 - RR42_RS03465 0.75 +0.6 769,534 + +0.7 769,535 - +0.7 769,535 - -0.0 769,603 + RR42_RS03470 0.11 -0.6 769,603 + RR42_RS03470 0.11 +0.8 769,603 + RR42_RS03470 0.11 +0.7 769,604 - RR42_RS03470 0.11 +0.6 769,604 - RR42_RS03470 0.11 +0.4 769,604 - RR42_RS03470 0.11 +0.1 769,604 - RR42_RS03470 0.11 +0.8 769,627 + RR42_RS03470 0.15 +0.7 769,628 - RR42_RS03470 0.15 -0.6 769,679 + RR42_RS03470 0.23 +0.2 769,679 + RR42_RS03470 0.23 -0.8 769,680 - RR42_RS03470 0.23 -0.9 769,680 - RR42_RS03470 0.23 -0.6 769,681 + RR42_RS03470 0.23 +1.7 769,682 - RR42_RS03470 0.24 +0.2 769,682 - RR42_RS03470 0.24 -1.4 769,682 - RR42_RS03470 0.24 +0.2 769,682 - RR42_RS03470 0.24 -0.0 769,682 - RR42_RS03470 0.24 +0.2
Or see this region's nucleotide sequence