Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03320 and RR42_RS03325 overlap by 4 nucleotides RR42_RS03325 and RR42_RS03330 are separated by 211 nucleotides RR42_RS03330 and RR42_RS03335 are separated by 64 nucleotides
RR42_RS03320: RR42_RS03320 - transcriptional regulator, at 739,742 to 740,473
_RS03320
RR42_RS03325: RR42_RS03325 - membrane protein, at 740,470 to 741,747
_RS03325
RR42_RS03330: RR42_RS03330 - GYD family protein, at 741,959 to 742,252
_RS03330
RR42_RS03335: RR42_RS03335 - glycerol-3-phosphate acyltransferase, at 742,317 to 742,934
_RS03335
Position (kb) 740
741
742 Strain fitness (log2 ratio) -2
-1
0
1 at 739.481 kb on + strand at 739.481 kb on + strand at 739.482 kb on - strand at 739.482 kb on - strand at 739.482 kb on - strand at 739.482 kb on - strand at 739.489 kb on - strand at 739.601 kb on + strand at 739.601 kb on + strand at 739.602 kb on - strand at 739.612 kb on + strand at 739.612 kb on + strand at 739.612 kb on + strand at 739.613 kb on - strand at 739.613 kb on - strand at 739.668 kb on + strand at 739.686 kb on - strand at 739.726 kb on + strand at 739.727 kb on - strand at 739.730 kb on + strand at 739.730 kb on + strand at 739.730 kb on + strand at 739.730 kb on + strand at 739.731 kb on - strand at 739.731 kb on - strand at 739.741 kb on + strand at 739.742 kb on - strand at 740.051 kb on + strand, within RR42_RS03320 at 740.051 kb on + strand, within RR42_RS03320 at 740.052 kb on - strand, within RR42_RS03320 at 740.313 kb on - strand, within RR42_RS03320 at 740.313 kb on - strand, within RR42_RS03320 at 740.406 kb on - strand at 740.406 kb on - strand at 740.434 kb on + strand at 740.434 kb on + strand at 740.435 kb on - strand at 740.435 kb on - strand at 740.435 kb on - strand at 740.786 kb on + strand, within RR42_RS03325 at 740.927 kb on + strand, within RR42_RS03325 at 740.927 kb on + strand, within RR42_RS03325 at 741.124 kb on - strand, within RR42_RS03325 at 741.452 kb on - strand, within RR42_RS03325 at 741.452 kb on - strand, within RR42_RS03325 at 741.452 kb on - strand, within RR42_RS03325 at 741.457 kb on + strand, within RR42_RS03325 at 741.458 kb on - strand at 741.843 kb on - strand at 741.843 kb on - strand at 741.864 kb on + strand at 741.882 kb on - strand at 741.899 kb on + strand at 741.900 kb on - strand at 741.982 kb on + strand at 741.982 kb on + strand at 741.982 kb on + strand at 741.983 kb on - strand at 742.103 kb on + strand, within RR42_RS03330 at 742.104 kb on - strand, within RR42_RS03330 at 742.104 kb on - strand, within RR42_RS03330 at 742.104 kb on - strand, within RR42_RS03330 at 742.114 kb on - strand, within RR42_RS03330 at 742.124 kb on - strand, within RR42_RS03330 at 742.124 kb on - strand, within RR42_RS03330 at 742.250 kb on + strand at 742.251 kb on - strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.254 kb on + strand at 742.255 kb on - strand at 742.255 kb on - strand at 742.255 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 739,481 + +0.1 739,481 + -0.6 739,482 - -0.6 739,482 - +1.3 739,482 - -0.3 739,482 - -0.6 739,489 - +0.9 739,601 + +0.7 739,601 + +0.2 739,602 - -1.1 739,612 + -0.3 739,612 + +0.5 739,612 + -0.6 739,613 - +0.7 739,613 - +0.4 739,668 + -0.7 739,686 - -1.3 739,726 + +0.5 739,727 - -0.5 739,730 + +1.2 739,730 + -2.1 739,730 + -0.3 739,730 + +0.0 739,731 - +0.4 739,731 - +0.5 739,741 + +0.6 739,742 - -1.3 740,051 + RR42_RS03320 0.42 +0.6 740,051 + RR42_RS03320 0.42 -0.7 740,052 - RR42_RS03320 0.42 +0.3 740,313 - RR42_RS03320 0.78 +0.5 740,313 - RR42_RS03320 0.78 -1.2 740,406 - -0.2 740,406 - -2.0 740,434 + -1.0 740,434 + -0.7 740,435 - +0.2 740,435 - -0.8 740,435 - -0.7 740,786 + RR42_RS03325 0.25 -0.4 740,927 + RR42_RS03325 0.36 -1.0 740,927 + RR42_RS03325 0.36 -0.9 741,124 - RR42_RS03325 0.51 -0.8 741,452 - RR42_RS03325 0.77 -0.9 741,452 - RR42_RS03325 0.77 +0.1 741,452 - RR42_RS03325 0.77 -0.1 741,457 + RR42_RS03325 0.77 -2.1 741,458 - -1.2 741,843 - +1.2 741,843 - -0.2 741,864 + +0.0 741,882 - +0.2 741,899 + -0.0 741,900 - -0.5 741,982 + -0.5 741,982 + +0.2 741,982 + -0.4 741,983 - -0.8 742,103 + RR42_RS03330 0.49 -0.6 742,104 - RR42_RS03330 0.49 -0.5 742,104 - RR42_RS03330 0.49 +1.0 742,104 - RR42_RS03330 0.49 +0.9 742,114 - RR42_RS03330 0.53 -0.7 742,124 - RR42_RS03330 0.56 +0.1 742,124 - RR42_RS03330 0.56 -0.7 742,250 + +0.6 742,251 - -0.9 742,254 + +1.0 742,254 + +0.4 742,254 + +0.2 742,254 + +1.5 742,254 + +0.5 742,254 + -0.8 742,255 - -0.4 742,255 - +1.0 742,255 - -1.3
Or see this region's nucleotide sequence