Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02545 and RR42_RS02550 are separated by 23 nucleotides RR42_RS02550 and RR42_RS02555 are separated by 88 nucleotides RR42_RS02555 and RR42_RS02560 are separated by 60 nucleotides RR42_RS02560 and RR42_RS02565 are separated by 174 nucleotides
RR42_RS02545: RR42_RS02545 - nitrate ABC transporter ATP-binding protein, at 573,303 to 574,166
_RS02545
RR42_RS02550: RR42_RS02550 - ABC transporter permease, at 574,190 to 574,954
_RS02550
RR42_RS02555: RR42_RS02555 - transcriptional regulator, at 575,043 to 575,501
_RS02555
RR42_RS02560: RR42_RS02560 - cysteine dioxygenase, at 575,562 to 576,158
_RS02560
RR42_RS02565: RR42_RS02565 - LysR family transcriptional regulator, at 576,333 to 577,304
_RS02565
Position (kb) 575
576 Strain fitness (log2 ratio) -2
-1
0
1
2 at 574.101 kb on - strand at 574.101 kb on - strand at 574.344 kb on - strand, within RR42_RS02550 at 574.375 kb on + strand, within RR42_RS02550 at 574.653 kb on + strand, within RR42_RS02550 at 574.654 kb on - strand, within RR42_RS02550 at 574.654 kb on - strand, within RR42_RS02550 at 574.654 kb on - strand, within RR42_RS02550 at 574.721 kb on + strand, within RR42_RS02550 at 574.721 kb on + strand, within RR42_RS02550 at 574.721 kb on + strand, within RR42_RS02550 at 574.898 kb on + strand at 574.898 kb on + strand at 574.899 kb on - strand at 574.899 kb on - strand at 574.899 kb on - strand at 574.899 kb on - strand at 574.899 kb on - strand at 575.050 kb on + strand at 575.050 kb on + strand at 575.074 kb on + strand at 575.143 kb on + strand, within RR42_RS02555 at 575.156 kb on - strand, within RR42_RS02555 at 575.216 kb on - strand, within RR42_RS02555 at 575.308 kb on - strand, within RR42_RS02555 at 575.362 kb on - strand, within RR42_RS02555 at 575.620 kb on + strand at 575.621 kb on - strand at 575.624 kb on + strand, within RR42_RS02560 at 575.624 kb on + strand, within RR42_RS02560 at 575.624 kb on + strand, within RR42_RS02560 at 575.624 kb on + strand, within RR42_RS02560 at 575.625 kb on - strand, within RR42_RS02560 at 575.625 kb on - strand, within RR42_RS02560 at 575.625 kb on - strand, within RR42_RS02560 at 575.898 kb on + strand, within RR42_RS02560 at 575.898 kb on + strand, within RR42_RS02560 at 575.898 kb on + strand, within RR42_RS02560 at 575.899 kb on - strand, within RR42_RS02560 at 575.899 kb on - strand, within RR42_RS02560 at 575.899 kb on - strand, within RR42_RS02560 at 575.914 kb on + strand, within RR42_RS02560 at 575.914 kb on + strand, within RR42_RS02560 at 575.915 kb on - strand, within RR42_RS02560 at 576.189 kb on + strand at 576.190 kb on - strand at 576.246 kb on + strand at 576.412 kb on + strand at 576.412 kb on + strand at 576.413 kb on - strand at 576.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 574,101 - -0.5 574,101 - +0.9 574,344 - RR42_RS02550 0.20 -1.0 574,375 + RR42_RS02550 0.24 -0.4 574,653 + RR42_RS02550 0.61 -1.1 574,654 - RR42_RS02550 0.61 -0.3 574,654 - RR42_RS02550 0.61 -1.9 574,654 - RR42_RS02550 0.61 -0.9 574,721 + RR42_RS02550 0.69 -0.6 574,721 + RR42_RS02550 0.69 +1.3 574,721 + RR42_RS02550 0.69 -0.4 574,898 + +0.6 574,898 + -0.4 574,899 - +2.0 574,899 - -0.9 574,899 - -1.1 574,899 - +0.2 574,899 - -0.8 575,050 + -1.1 575,050 + -0.2 575,074 + +1.2 575,143 + RR42_RS02555 0.22 +1.6 575,156 - RR42_RS02555 0.25 +0.2 575,216 - RR42_RS02555 0.38 +0.4 575,308 - RR42_RS02555 0.58 +0.7 575,362 - RR42_RS02555 0.69 -1.0 575,620 + -1.4 575,621 - -0.1 575,624 + RR42_RS02560 0.10 +1.0 575,624 + RR42_RS02560 0.10 +0.5 575,624 + RR42_RS02560 0.10 +0.0 575,624 + RR42_RS02560 0.10 -0.5 575,625 - RR42_RS02560 0.11 -0.3 575,625 - RR42_RS02560 0.11 +1.2 575,625 - RR42_RS02560 0.11 -0.6 575,898 + RR42_RS02560 0.56 -1.6 575,898 + RR42_RS02560 0.56 -0.1 575,898 + RR42_RS02560 0.56 -2.0 575,899 - RR42_RS02560 0.56 +0.1 575,899 - RR42_RS02560 0.56 +0.4 575,899 - RR42_RS02560 0.56 +0.8 575,914 + RR42_RS02560 0.59 -0.6 575,914 + RR42_RS02560 0.59 +0.2 575,915 - RR42_RS02560 0.59 +0.2 576,189 + +0.3 576,190 - +0.9 576,246 + +0.4 576,412 + -0.7 576,412 + +1.6 576,413 - +1.6 576,413 - +2.4
Or see this region's nucleotide sequence