Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02070 and RR42_RS02075 are separated by 35 nucleotides RR42_RS02075 and RR42_RS02080 are separated by 384 nucleotides RR42_RS02080 and RR42_RS02085 are separated by 49 nucleotides
RR42_RS02070: RR42_RS02070 - HPr kinase, at 460,970 to 461,941
_RS02070
RR42_RS02075: RR42_RS02075 - PTS sugar transporter subunit IIA, at 461,977 to 462,432
_RS02075
RR42_RS02080: RR42_RS02080 - ribosome hibernation promoting factor, at 462,817 to 463,167
_RS02080
RR42_RS02085: RR42_RS02085 - RNA polymerase subunit sigma-54, at 463,217 to 464,692
_RS02085
Position (kb) 461
462
463 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 462.454 kb on - strand at 462.454 kb on - strand at 462.568 kb on - strand at 462.568 kb on - strand at 462.569 kb on + strand at 462.569 kb on + strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.570 kb on - strand at 462.603 kb on + strand at 462.604 kb on - strand at 462.657 kb on + strand at 462.657 kb on + strand at 462.657 kb on + strand at 462.657 kb on + strand at 462.657 kb on + strand at 462.658 kb on - strand at 462.658 kb on - strand at 462.658 kb on - strand at 462.658 kb on - strand at 462.658 kb on - strand at 462.661 kb on + strand at 462.662 kb on - strand at 462.662 kb on - strand at 462.662 kb on - strand at 462.662 kb on - strand at 462.662 kb on - strand at 462.673 kb on + strand at 462.673 kb on + strand at 462.674 kb on - strand at 462.674 kb on - strand at 462.674 kb on - strand at 462.682 kb on - strand at 462.682 kb on - strand at 462.682 kb on - strand at 462.682 kb on - strand at 462.682 kb on - strand at 462.685 kb on + strand at 462.686 kb on - strand at 462.686 kb on - strand at 462.686 kb on - strand at 462.686 kb on - strand at 462.722 kb on - strand at 462.722 kb on - strand at 462.722 kb on - strand at 462.797 kb on - strand at 462.849 kb on - strand at 462.849 kb on - strand at 462.942 kb on - strand, within RR42_RS02080 at 462.942 kb on - strand, within RR42_RS02080 at 462.991 kb on + strand, within RR42_RS02080 at 462.991 kb on + strand, within RR42_RS02080 at 462.992 kb on - strand, within RR42_RS02080 at 463.032 kb on + strand, within RR42_RS02080 at 463.032 kb on + strand, within RR42_RS02080 at 463.033 kb on - strand, within RR42_RS02080 at 463.033 kb on - strand, within RR42_RS02080 at 463.033 kb on - strand, within RR42_RS02080 at 463.057 kb on + strand, within RR42_RS02080 at 463.057 kb on + strand, within RR42_RS02080 at 463.057 kb on + strand, within RR42_RS02080 at 463.089 kb on + strand, within RR42_RS02080 at 463.112 kb on + strand, within RR42_RS02080 at 463.112 kb on + strand, within RR42_RS02080 at 463.113 kb on - strand, within RR42_RS02080 at 463.113 kb on - strand, within RR42_RS02080 at 463.168 kb on - strand at 463.218 kb on + strand at 463.218 kb on + strand at 463.218 kb on + strand at 463.219 kb on - strand at 463.229 kb on - strand at 463.238 kb on + strand at 463.428 kb on - strand, within RR42_RS02085
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 462,454 - -0.2 462,454 - +0.6 462,568 - -0.1 462,568 - -2.3 462,569 + +0.0 462,569 + +3.2 462,570 - +0.2 462,570 - +0.5 462,570 - -0.1 462,570 - +0.4 462,570 - -0.6 462,570 - -0.4 462,570 - +0.4 462,570 - +1.1 462,570 - -0.1 462,603 + -0.5 462,604 - -0.8 462,657 + +1.2 462,657 + +1.2 462,657 + -1.6 462,657 + +0.1 462,657 + -0.8 462,658 - +0.6 462,658 - -1.9 462,658 - -0.2 462,658 - +0.5 462,658 - -0.4 462,661 + +0.9 462,662 - -0.6 462,662 - +0.0 462,662 - -0.2 462,662 - +1.2 462,662 - -0.2 462,673 + +0.3 462,673 + -0.1 462,674 - -0.8 462,674 - +0.2 462,674 - +0.2 462,682 - +0.1 462,682 - -0.8 462,682 - -0.8 462,682 - +0.4 462,682 - -0.1 462,685 + +1.2 462,686 - +0.5 462,686 - -1.8 462,686 - -0.4 462,686 - +0.8 462,722 - -1.0 462,722 - -1.4 462,722 - +0.3 462,797 - +0.2 462,849 - +0.1 462,849 - -0.4 462,942 - RR42_RS02080 0.36 -0.0 462,942 - RR42_RS02080 0.36 +0.2 462,991 + RR42_RS02080 0.50 -0.4 462,991 + RR42_RS02080 0.50 +1.0 462,992 - RR42_RS02080 0.50 +0.2 463,032 + RR42_RS02080 0.61 -0.4 463,032 + RR42_RS02080 0.61 +0.3 463,033 - RR42_RS02080 0.62 +0.4 463,033 - RR42_RS02080 0.62 +1.2 463,033 - RR42_RS02080 0.62 +0.2 463,057 + RR42_RS02080 0.68 +0.4 463,057 + RR42_RS02080 0.68 +0.2 463,057 + RR42_RS02080 0.68 +0.5 463,089 + RR42_RS02080 0.77 -1.1 463,112 + RR42_RS02080 0.84 -0.9 463,112 + RR42_RS02080 0.84 +0.1 463,113 - RR42_RS02080 0.84 +0.3 463,113 - RR42_RS02080 0.84 +0.5 463,168 - +0.5 463,218 + -1.9 463,218 + -0.1 463,218 + +0.0 463,219 - +0.4 463,229 - +0.4 463,238 + -0.4 463,428 - RR42_RS02085 0.14 -0.8
Or see this region's nucleotide sequence