Experiment: R2A with Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02060 and RR42_RS02065 are separated by 119 nucleotides RR42_RS02065 and RR42_RS02070 are separated by 191 nucleotides
RR42_RS02060: RR42_RS02060 - nucleotide-binding protein, at 459,418 to 460,335
_RS02060
RR42_RS02065: RR42_RS02065 - phosphate starvation-inducible protein PsiF, at 460,455 to 460,778
_RS02065
RR42_RS02070: RR42_RS02070 - HPr kinase, at 460,970 to 461,941
_RS02070
Position (kb) 460
461 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 459.459 kb on + strand at 459.459 kb on + strand at 459.460 kb on - strand at 459.460 kb on - strand at 459.460 kb on - strand at 459.460 kb on - strand at 459.460 kb on - strand at 459.476 kb on + strand at 459.476 kb on + strand at 459.476 kb on + strand at 459.476 kb on + strand at 459.477 kb on - strand at 459.500 kb on + strand at 459.500 kb on + strand at 459.500 kb on + strand at 459.501 kb on - strand at 459.501 kb on - strand at 459.549 kb on - strand, within RR42_RS02060 at 459.549 kb on - strand, within RR42_RS02060 at 459.594 kb on - strand, within RR42_RS02060 at 459.594 kb on - strand, within RR42_RS02060 at 459.601 kb on + strand, within RR42_RS02060 at 459.602 kb on - strand, within RR42_RS02060 at 459.602 kb on - strand, within RR42_RS02060 at 459.602 kb on - strand, within RR42_RS02060 at 459.602 kb on - strand, within RR42_RS02060 at 459.602 kb on - strand, within RR42_RS02060 at 459.695 kb on + strand, within RR42_RS02060 at 459.695 kb on + strand, within RR42_RS02060 at 459.695 kb on + strand, within RR42_RS02060 at 459.696 kb on - strand at 459.696 kb on - strand, within RR42_RS02060 at 459.696 kb on - strand, within RR42_RS02060 at 459.696 kb on - strand, within RR42_RS02060 at 459.699 kb on - strand, within RR42_RS02060 at 459.701 kb on - strand, within RR42_RS02060 at 459.837 kb on + strand, within RR42_RS02060 at 459.837 kb on + strand, within RR42_RS02060 at 459.837 kb on + strand, within RR42_RS02060 at 459.837 kb on + strand, within RR42_RS02060 at 459.838 kb on - strand, within RR42_RS02060 at 459.911 kb on + strand, within RR42_RS02060 at 460.050 kb on - strand, within RR42_RS02060 at 460.050 kb on - strand, within RR42_RS02060 at 460.071 kb on + strand, within RR42_RS02060 at 460.072 kb on - strand, within RR42_RS02060 at 460.209 kb on - strand, within RR42_RS02060 at 460.209 kb on - strand, within RR42_RS02060 at 460.209 kb on - strand, within RR42_RS02060 at 460.260 kb on - strand at 460.276 kb on + strand at 460.276 kb on + strand at 460.277 kb on - strand at 460.277 kb on - strand at 460.277 kb on - strand at 460.277 kb on - strand at 460.320 kb on + strand at 460.320 kb on + strand at 460.320 kb on + strand at 460.321 kb on - strand at 460.321 kb on - strand at 460.321 kb on - strand at 460.321 kb on - strand at 460.324 kb on + strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.325 kb on - strand at 460.335 kb on + strand at 460.335 kb on + strand at 460.349 kb on + strand at 460.349 kb on + strand at 460.350 kb on - strand at 460.391 kb on - strand at 460.423 kb on + strand at 460.451 kb on + strand at 460.456 kb on + strand at 460.456 kb on + strand at 460.456 kb on + strand at 460.456 kb on + strand at 460.456 kb on + strand at 460.457 kb on - strand at 460.457 kb on - strand at 460.577 kb on + strand, within RR42_RS02065 at 460.578 kb on - strand, within RR42_RS02065 at 460.858 kb on + strand at 460.859 kb on - strand at 460.915 kb on + strand at 460.915 kb on + strand at 460.915 kb on + strand at 460.916 kb on - strand at 460.916 kb on - strand at 460.916 kb on - strand at 460.916 kb on - strand at 460.972 kb on - strand at 460.972 kb on - strand at 460.972 kb on - strand at 460.972 kb on - strand at 460.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM remove 459,459 + -0.1 459,459 + -0.3 459,460 - +1.0 459,460 - -0.0 459,460 - +1.4 459,460 - -0.2 459,460 - -1.1 459,476 + +1.4 459,476 + +1.1 459,476 + +0.7 459,476 + +1.2 459,477 - +2.2 459,500 + -0.6 459,500 + -0.1 459,500 + +0.3 459,501 - +1.0 459,501 - +1.2 459,549 - RR42_RS02060 0.14 +1.1 459,549 - RR42_RS02060 0.14 +0.9 459,594 - RR42_RS02060 0.19 +1.2 459,594 - RR42_RS02060 0.19 +3.8 459,601 + RR42_RS02060 0.20 +1.5 459,602 - RR42_RS02060 0.20 +1.4 459,602 - RR42_RS02060 0.20 +0.7 459,602 - RR42_RS02060 0.20 +1.5 459,602 - RR42_RS02060 0.20 +0.6 459,602 - RR42_RS02060 0.20 +1.8 459,695 + RR42_RS02060 0.30 +0.4 459,695 + RR42_RS02060 0.30 +1.3 459,695 + RR42_RS02060 0.30 +1.1 459,696 - +0.6 459,696 - RR42_RS02060 0.30 +0.3 459,696 - RR42_RS02060 0.30 +0.5 459,696 - RR42_RS02060 0.30 -0.2 459,699 - RR42_RS02060 0.31 +0.8 459,701 - RR42_RS02060 0.31 +1.5 459,837 + RR42_RS02060 0.46 +0.7 459,837 + RR42_RS02060 0.46 +0.9 459,837 + RR42_RS02060 0.46 +0.5 459,837 + RR42_RS02060 0.46 +1.1 459,838 - RR42_RS02060 0.46 +0.9 459,911 + RR42_RS02060 0.54 +1.0 460,050 - RR42_RS02060 0.69 +0.4 460,050 - RR42_RS02060 0.69 -0.4 460,071 + RR42_RS02060 0.71 +0.8 460,072 - RR42_RS02060 0.71 +0.8 460,209 - RR42_RS02060 0.86 +0.9 460,209 - RR42_RS02060 0.86 +0.5 460,209 - RR42_RS02060 0.86 +1.4 460,260 - +0.7 460,276 + +0.1 460,276 + +0.7 460,277 - +0.7 460,277 - +1.1 460,277 - +0.4 460,277 - -0.2 460,320 + -0.1 460,320 + +1.1 460,320 + -0.4 460,321 - +1.0 460,321 - +0.6 460,321 - +0.5 460,321 - +1.4 460,324 + -0.2 460,325 - +0.1 460,325 - +1.3 460,325 - +1.0 460,325 - +0.8 460,325 - +1.0 460,325 - +0.2 460,325 - +0.4 460,325 - +1.2 460,335 + +0.4 460,335 + +0.2 460,349 + -0.4 460,349 + +1.0 460,350 - -0.2 460,391 - +0.3 460,423 + +0.8 460,451 + +2.0 460,456 + -1.1 460,456 + +1.0 460,456 + -0.1 460,456 + +0.5 460,456 + +0.1 460,457 - -1.1 460,457 - -0.5 460,577 + RR42_RS02065 0.38 -1.4 460,578 - RR42_RS02065 0.38 -0.2 460,858 + +0.1 460,859 - +0.0 460,915 + -1.0 460,915 + +0.0 460,915 + -0.8 460,916 - +0.5 460,916 - -0.9 460,916 - -0.1 460,916 - -0.2 460,972 - -1.2 460,972 - +0.8 460,972 - +0.7 460,972 - -0.4 460,972 - -1.4
Or see this region's nucleotide sequence