Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01580

Experiment: R2A with Chlorite 4 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS01575 and RR42_RS01580 are separated by 46 nucleotidesRR42_RS01580 and RR42_RS01585 are separated by 149 nucleotides RR42_RS01575: RR42_RS01575 - omega amino acid--pyruvate aminotransferase, at 355,476 to 356,807 _RS01575 RR42_RS01580: RR42_RS01580 - methylmalonate-semialdehyde dehydrogenase, at 356,854 to 358,371 _RS01580 RR42_RS01585: RR42_RS01585 - amino acid permease, at 358,521 to 359,915 _RS01585 Position (kb) 356 357 358 359Strain fitness (log2 ratio) -2 -1 0 1 2at 355.857 kb on + strand, within RR42_RS01575at 355.857 kb on + strand, within RR42_RS01575at 355.857 kb on + strand, within RR42_RS01575at 355.858 kb on - strand, within RR42_RS01575at 356.024 kb on + strand, within RR42_RS01575at 356.024 kb on + strand, within RR42_RS01575at 356.025 kb on - strand, within RR42_RS01575at 356.040 kb on + strand, within RR42_RS01575at 356.185 kb on - strand, within RR42_RS01575at 356.437 kb on - strand, within RR42_RS01575at 356.437 kb on - strand, within RR42_RS01575at 356.437 kb on - strand, within RR42_RS01575at 356.442 kb on + strand, within RR42_RS01575at 356.443 kb on - strand, within RR42_RS01575at 356.443 kb on - strand, within RR42_RS01575at 356.443 kb on - strand, within RR42_RS01575at 356.488 kb on - strand, within RR42_RS01575at 356.489 kb on + strandat 356.489 kb on + strand, within RR42_RS01575at 356.490 kb on - strand, within RR42_RS01575at 356.490 kb on - strand, within RR42_RS01575at 356.490 kb on - strand, within RR42_RS01575at 356.493 kb on + strand, within RR42_RS01575at 356.493 kb on + strand, within RR42_RS01575at 356.493 kb on + strand, within RR42_RS01575at 356.494 kb on - strand, within RR42_RS01575at 356.494 kb on - strand, within RR42_RS01575at 356.494 kb on - strand, within RR42_RS01575at 356.494 kb on - strand, within RR42_RS01575at 356.658 kb on + strand, within RR42_RS01575at 356.897 kb on - strandat 357.381 kb on + strand, within RR42_RS01580at 357.381 kb on + strand, within RR42_RS01580at 357.381 kb on + strand, within RR42_RS01580at 357.382 kb on - strand, within RR42_RS01580at 357.571 kb on + strand, within RR42_RS01580at 357.572 kb on - strand, within RR42_RS01580at 357.578 kb on - strand, within RR42_RS01580at 357.697 kb on + strand, within RR42_RS01580at 357.698 kb on - strand, within RR42_RS01580at 357.880 kb on + strand, within RR42_RS01580at 357.880 kb on + strand, within RR42_RS01580at 357.880 kb on + strand, within RR42_RS01580at 357.881 kb on - strand, within RR42_RS01580at 357.964 kb on + strand, within RR42_RS01580at 357.964 kb on + strand, within RR42_RS01580at 357.965 kb on - strand, within RR42_RS01580at 357.965 kb on - strand, within RR42_RS01580at 357.965 kb on - strand, within RR42_RS01580at 358.012 kb on + strand, within RR42_RS01580at 358.013 kb on - strand, within RR42_RS01580at 358.013 kb on - strand, within RR42_RS01580at 358.013 kb on - strand, within RR42_RS01580at 358.120 kb on + strand, within RR42_RS01580at 358.120 kb on + strand, within RR42_RS01580at 358.120 kb on + strand, within RR42_RS01580at 358.264 kb on + strandat 358.265 kb on - strandat 358.265 kb on - strandat 358.289 kb on - strandat 358.298 kb on - strandat 358.350 kb on + strandat 358.365 kb on + strandat 358.366 kb on - strandat 358.366 kb on - strandat 358.747 kb on - strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.788 kb on + strand, within RR42_RS01585at 358.789 kb on - strand, within RR42_RS01585at 358.789 kb on - strand, within RR42_RS01585at 358.789 kb on - strand, within RR42_RS01585at 358.789 kb on - strand, within RR42_RS01585at 358.794 kb on + strand, within RR42_RS01585at 358.794 kb on + strand, within RR42_RS01585at 358.794 kb on + strand, within RR42_RS01585at 358.795 kb on - strand, within RR42_RS01585at 358.795 kb on - strand, within RR42_RS01585at 358.795 kb on - strand, within RR42_RS01585at 358.795 kb on - strand, within RR42_RS01585at 358.795 kb on - strand, within RR42_RS01585at 358.795 kb on - strand, within RR42_RS01585at 358.796 kb on + strand, within RR42_RS01585at 358.796 kb on + strand, within RR42_RS01585at 358.796 kb on + strand, within RR42_RS01585at 358.796 kb on + strand, within RR42_RS01585at 358.796 kb on + strand, within RR42_RS01585at 358.797 kb on - strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.800 kb on + strand, within RR42_RS01585at 358.857 kb on + strand, within RR42_RS01585at 358.857 kb on + strand, within RR42_RS01585at 358.857 kb on + strand, within RR42_RS01585at 358.858 kb on - strand, within RR42_RS01585at 358.858 kb on - strand, within RR42_RS01585at 358.899 kb on + strand, within RR42_RS01585at 359.216 kb on + strand, within RR42_RS01585at 359.319 kb on + strand, within RR42_RS01585at 359.319 kb on + strand, within RR42_RS01585at 359.319 kb on + strand, within RR42_RS01585at 359.320 kb on - strand, within RR42_RS01585at 359.320 kb on - strand, within RR42_RS01585at 359.320 kb on - strand, within RR42_RS01585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM
remove
355,857 + RR42_RS01575 0.29 +0.7
355,857 + RR42_RS01575 0.29 -0.5
355,857 + RR42_RS01575 0.29 -0.2
355,858 - RR42_RS01575 0.29 -1.0
356,024 + RR42_RS01575 0.41 +1.1
356,024 + RR42_RS01575 0.41 -0.3
356,025 - RR42_RS01575 0.41 +1.3
356,040 + RR42_RS01575 0.42 +1.6
356,185 - RR42_RS01575 0.53 -1.7
356,437 - RR42_RS01575 0.72 -0.2
356,437 - RR42_RS01575 0.72 +0.6
356,437 - RR42_RS01575 0.72 +0.2
356,442 + RR42_RS01575 0.73 +0.0
356,443 - RR42_RS01575 0.73 +0.3
356,443 - RR42_RS01575 0.73 -0.2
356,443 - RR42_RS01575 0.73 +0.3
356,488 - RR42_RS01575 0.76 -1.6
356,489 + -0.3
356,489 + RR42_RS01575 0.76 +0.3
356,490 - RR42_RS01575 0.76 +0.7
356,490 - RR42_RS01575 0.76 +0.4
356,490 - RR42_RS01575 0.76 -1.9
356,493 + RR42_RS01575 0.76 +0.7
356,493 + RR42_RS01575 0.76 -0.8
356,493 + RR42_RS01575 0.76 +0.5
356,494 - RR42_RS01575 0.76 -0.5
356,494 - RR42_RS01575 0.76 -1.3
356,494 - RR42_RS01575 0.76 -0.4
356,494 - RR42_RS01575 0.76 -0.2
356,658 + RR42_RS01575 0.89 +0.3
356,897 - -0.1
357,381 + RR42_RS01580 0.35 -0.2
357,381 + RR42_RS01580 0.35 +0.7
357,381 + RR42_RS01580 0.35 +0.6
357,382 - RR42_RS01580 0.35 -0.5
357,571 + RR42_RS01580 0.47 +0.2
357,572 - RR42_RS01580 0.47 +2.0
357,578 - RR42_RS01580 0.48 +1.3
357,697 + RR42_RS01580 0.56 +0.3
357,698 - RR42_RS01580 0.56 -0.2
357,880 + RR42_RS01580 0.68 +0.3
357,880 + RR42_RS01580 0.68 +0.1
357,880 + RR42_RS01580 0.68 -0.4
357,881 - RR42_RS01580 0.68 +0.1
357,964 + RR42_RS01580 0.73 +1.0
357,964 + RR42_RS01580 0.73 +1.3
357,965 - RR42_RS01580 0.73 +0.7
357,965 - RR42_RS01580 0.73 -0.6
357,965 - RR42_RS01580 0.73 +1.6
358,012 + RR42_RS01580 0.76 -0.3
358,013 - RR42_RS01580 0.76 +0.9
358,013 - RR42_RS01580 0.76 +0.7
358,013 - RR42_RS01580 0.76 -0.3
358,120 + RR42_RS01580 0.83 +0.7
358,120 + RR42_RS01580 0.83 +1.6
358,120 + RR42_RS01580 0.83 -2.6
358,264 + -0.3
358,265 - -0.8
358,265 - +0.2
358,289 - -0.4
358,298 - +0.0
358,350 + -0.9
358,365 + +0.2
358,366 - +1.0
358,366 - -1.3
358,747 - RR42_RS01585 0.16 -2.7
358,788 + RR42_RS01585 0.19 +1.6
358,788 + RR42_RS01585 0.19 +0.1
358,788 + RR42_RS01585 0.19 -0.6
358,788 + RR42_RS01585 0.19 -0.4
358,788 + RR42_RS01585 0.19 -0.3
358,788 + RR42_RS01585 0.19 +0.6
358,788 + RR42_RS01585 0.19 +0.2
358,789 - RR42_RS01585 0.19 -0.5
358,789 - RR42_RS01585 0.19 -0.7
358,789 - RR42_RS01585 0.19 +0.4
358,789 - RR42_RS01585 0.19 -1.0
358,794 + RR42_RS01585 0.20 -0.3
358,794 + RR42_RS01585 0.20 +0.3
358,794 + RR42_RS01585 0.20 -0.3
358,795 - RR42_RS01585 0.20 +0.5
358,795 - RR42_RS01585 0.20 +0.7
358,795 - RR42_RS01585 0.20 +0.7
358,795 - RR42_RS01585 0.20 -0.3
358,795 - RR42_RS01585 0.20 +0.2
358,795 - RR42_RS01585 0.20 +0.1
358,796 + RR42_RS01585 0.20 +0.1
358,796 + RR42_RS01585 0.20 -1.8
358,796 + RR42_RS01585 0.20 +0.0
358,796 + RR42_RS01585 0.20 -1.4
358,796 + RR42_RS01585 0.20 +0.3
358,797 - RR42_RS01585 0.20 +0.2
358,800 + RR42_RS01585 0.20 +1.3
358,800 + RR42_RS01585 0.20 -0.1
358,800 + RR42_RS01585 0.20 +0.8
358,800 + RR42_RS01585 0.20 -0.8
358,800 + RR42_RS01585 0.20 -0.0
358,800 + RR42_RS01585 0.20 +0.3
358,800 + RR42_RS01585 0.20 +0.3
358,857 + RR42_RS01585 0.24 +0.4
358,857 + RR42_RS01585 0.24 +0.5
358,857 + RR42_RS01585 0.24 +0.4
358,858 - RR42_RS01585 0.24 +0.3
358,858 - RR42_RS01585 0.24 +0.3
358,899 + RR42_RS01585 0.27 +0.0
359,216 + RR42_RS01585 0.50 +0.1
359,319 + RR42_RS01585 0.57 -1.0
359,319 + RR42_RS01585 0.57 +0.9
359,319 + RR42_RS01585 0.57 -0.9
359,320 - RR42_RS01585 0.57 +0.4
359,320 - RR42_RS01585 0.57 +0.8
359,320 - RR42_RS01585 0.57 -1.4

Or see this region's nucleotide sequence