Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01470

Experiment: R2A with Chlorite 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01465 and RR42_RS01470 are separated by 56 nucleotidesRR42_RS01470 and RR42_RS01475 are separated by 224 nucleotidesRR42_RS01475 and RR42_RS01480 are separated by 1 nucleotides RR42_RS01465: RR42_RS01465 - histidine kinase, at 331,119 to 333,086 _RS01465 RR42_RS01470: RR42_RS01470 - hypothetical protein, at 333,143 to 333,856 _RS01470 RR42_RS01475: RR42_RS01475 - hypothetical protein, at 334,081 to 334,401 _RS01475 RR42_RS01480: RR42_RS01480 - hypothetical protein, at 334,403 to 335,668 _RS01480 Position (kb) 333 334Strain fitness (log2 ratio) -2 -1 0 1 2 3at 332.181 kb on + strand, within RR42_RS01465at 332.181 kb on + strand, within RR42_RS01465at 332.181 kb on + strand, within RR42_RS01465at 332.182 kb on - strand, within RR42_RS01465at 332.182 kb on - strand, within RR42_RS01465at 332.182 kb on - strand, within RR42_RS01465at 332.182 kb on - strand, within RR42_RS01465at 332.182 kb on - strand, within RR42_RS01465at 332.182 kb on - strand, within RR42_RS01465at 332.475 kb on + strand, within RR42_RS01465at 332.475 kb on + strand, within RR42_RS01465at 332.476 kb on - strand, within RR42_RS01465at 332.477 kb on + strand, within RR42_RS01465at 332.796 kb on + strand, within RR42_RS01465at 332.796 kb on + strand, within RR42_RS01465at 332.796 kb on + strand, within RR42_RS01465at 332.796 kb on + strand, within RR42_RS01465at 332.797 kb on - strand, within RR42_RS01465at 332.797 kb on - strand, within RR42_RS01465at 332.797 kb on - strand, within RR42_RS01465at 332.803 kb on - strand, within RR42_RS01465at 333.227 kb on + strand, within RR42_RS01470at 333.228 kb on - strand, within RR42_RS01470at 333.300 kb on + strand, within RR42_RS01470at 333.301 kb on - strand, within RR42_RS01470at 333.446 kb on + strand, within RR42_RS01470at 333.630 kb on + strand, within RR42_RS01470at 333.630 kb on + strand, within RR42_RS01470at 333.630 kb on + strand, within RR42_RS01470at 333.631 kb on - strand, within RR42_RS01470at 333.631 kb on - strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.704 kb on + strand, within RR42_RS01470at 333.705 kb on - strand, within RR42_RS01470at 333.705 kb on - strand, within RR42_RS01470at 333.705 kb on - strand, within RR42_RS01470at 333.815 kb on + strandat 333.816 kb on - strandat 333.928 kb on - strandat 333.958 kb on + strandat 333.959 kb on - strandat 334.066 kb on + strandat 334.066 kb on + strandat 334.066 kb on + strandat 334.097 kb on + strandat 334.098 kb on - strandat 334.098 kb on - strandat 334.098 kb on - strandat 334.253 kb on + strand, within RR42_RS01475at 334.253 kb on - strand, within RR42_RS01475at 334.254 kb on - strand, within RR42_RS01475at 334.254 kb on - strand, within RR42_RS01475at 334.258 kb on + strand, within RR42_RS01475at 334.259 kb on - strand, within RR42_RS01475at 334.259 kb on - strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.291 kb on + strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.292 kb on - strand, within RR42_RS01475at 334.450 kb on - strandat 334.674 kb on + strand, within RR42_RS01480

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM
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332,181 + RR42_RS01465 0.54 -0.9
332,181 + RR42_RS01465 0.54 +0.3
332,181 + RR42_RS01465 0.54 -0.7
332,182 - RR42_RS01465 0.54 +1.4
332,182 - RR42_RS01465 0.54 +1.3
332,182 - RR42_RS01465 0.54 -0.6
332,182 - RR42_RS01465 0.54 +0.0
332,182 - RR42_RS01465 0.54 -0.5
332,182 - RR42_RS01465 0.54 -2.4
332,475 + RR42_RS01465 0.69 -0.7
332,475 + RR42_RS01465 0.69 -0.4
332,476 - RR42_RS01465 0.69 +0.2
332,477 + RR42_RS01465 0.69 -0.5
332,796 + RR42_RS01465 0.85 -0.0
332,796 + RR42_RS01465 0.85 +0.3
332,796 + RR42_RS01465 0.85 +0.9
332,796 + RR42_RS01465 0.85 +0.3
332,797 - RR42_RS01465 0.85 -1.4
332,797 - RR42_RS01465 0.85 -0.2
332,797 - RR42_RS01465 0.85 -1.0
332,803 - RR42_RS01465 0.86 -0.1
333,227 + RR42_RS01470 0.12 -1.5
333,228 - RR42_RS01470 0.12 +0.7
333,300 + RR42_RS01470 0.22 +0.6
333,301 - RR42_RS01470 0.22 +1.3
333,446 + RR42_RS01470 0.42 +0.3
333,630 + RR42_RS01470 0.68 -0.0
333,630 + RR42_RS01470 0.68 +1.3
333,630 + RR42_RS01470 0.68 -0.3
333,631 - RR42_RS01470 0.68 +0.9
333,631 - RR42_RS01470 0.68 +0.5
333,704 + RR42_RS01470 0.79 +0.4
333,704 + RR42_RS01470 0.79 -0.1
333,704 + RR42_RS01470 0.79 -0.1
333,704 + RR42_RS01470 0.79 +1.3
333,704 + RR42_RS01470 0.79 +1.0
333,705 - RR42_RS01470 0.79 +0.9
333,705 - RR42_RS01470 0.79 +0.7
333,705 - RR42_RS01470 0.79 -1.6
333,815 + -0.0
333,816 - -0.1
333,928 - -0.2
333,958 + -1.9
333,959 - -0.3
334,066 + +0.4
334,066 + -1.5
334,066 + -1.3
334,097 + +0.4
334,098 - +0.2
334,098 - -0.0
334,098 - +0.5
334,253 + RR42_RS01475 0.54 +0.3
334,253 - RR42_RS01475 0.54 +0.4
334,254 - RR42_RS01475 0.54 +0.8
334,254 - RR42_RS01475 0.54 -0.4
334,258 + RR42_RS01475 0.55 +0.1
334,259 - RR42_RS01475 0.55 +0.2
334,259 - RR42_RS01475 0.55 +0.3
334,291 + RR42_RS01475 0.65 +1.3
334,291 + RR42_RS01475 0.65 +0.6
334,291 + RR42_RS01475 0.65 +0.3
334,291 + RR42_RS01475 0.65 +0.5
334,291 + RR42_RS01475 0.65 +0.2
334,291 + RR42_RS01475 0.65 +0.3
334,292 - RR42_RS01475 0.66 +0.1
334,292 - RR42_RS01475 0.66 +0.1
334,292 - RR42_RS01475 0.66 -2.0
334,292 - RR42_RS01475 0.66 -0.4
334,292 - RR42_RS01475 0.66 +0.4
334,450 - +3.1
334,674 + RR42_RS01480 0.21 -2.3

Or see this region's nucleotide sequence