Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00580

Experiment: R2A with Chlorite 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00575 and RR42_RS00580 are separated by 202 nucleotidesRR42_RS00580 and RR42_RS00585 are separated by 651 nucleotides RR42_RS00575: RR42_RS00575 - rod shape-determining protein MreC, at 152,743 to 153,615 _RS00575 RR42_RS00580: RR42_RS00580 - rod shape-determining protein MreB, at 153,818 to 154,861 _RS00580 RR42_RS00585: RR42_RS00585 - glutamyl-tRNA amidotransferase, at 155,513 to 155,812 _RS00585 Position (kb) 153 154 155Strain fitness (log2 ratio) -2 -1 0 1at 153.552 kb on - strandat 153.609 kb on - strandat 154.951 kb on - strandat 155.137 kb on - strandat 155.380 kb on + strandat 155.381 kb on - strandat 155.382 kb on + strandat 155.382 kb on + strandat 155.810 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chlorite 4 mM
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153,552 - +0.7
153,609 - +0.0
154,951 - -2.1
155,137 - -0.7
155,380 + -0.6
155,381 - -0.3
155,382 + +0.1
155,382 + +0.9
155,810 + -0.1

Or see this region's nucleotide sequence