Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_RNA20

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
1,384,186	+				-0.0
1,384,186	+				+0.1
1,384,186	+				-1.6
1,384,186	+				-0.5
1,384,186	+				+0.1
1,384,186	+				+0.0
1,384,186	+				+0.4
1,384,186	+				+1.4
1,384,186	+				-0.0
1,384,186	+				+0.7
1,384,187	-				-0.1
1,384,187	-				-0.1
1,384,187	-				-0.9
1,384,187	-				+0.1
1,384,187	-				-1.3
1,384,187	-				-0.0
1,384,187	-				-0.8
1,384,188	+				-0.4
1,384,188	+				+0.8
1,384,188	+				-0.0
1,384,188	+				+0.1
1,384,189	-				-1.6
1,384,189	-				+1.2
1,384,295	+				-0.2
1,384,295	+				+1.2
1,384,295	+				-1.1
1,384,295	+				+0.2
1,384,295	+				-0.0
1,384,295	+				-1.3
1,384,296	-				+0.8
1,384,296	-				-1.6
1,384,296	-				-2.0
1,384,296	-				+0.3
1,384,298	+				-0.1
1,384,299	-				+0.5
1,384,394	+				-1.0
1,384,395	-				+1.1
1,384,399	+				-0.6
1,384,400	-				+0.7
1,384,429	+				+0.7
1,384,430	-				+0.3
1,384,430	-				+0.6
1,384,430	-				-1.0
1,384,457	+				+0.5
1,384,482	+				+0.2
1,384,482	+				+0.4
1,384,601	-				-0.9
1,384,601	-				-0.0
1,384,601	-				-0.0
1,384,753	-		Psyr_1226	0.44	+0.3
1,384,777	-		Psyr_1226	0.51	-0.1
1,384,890	+		Psyr_1226	0.83	+1.4
1,384,897	+		Psyr_1226	0.85	+1.2
1,384,898	-		Psyr_1226	0.85	+1.8
1,385,032	+				-0.3
1,385,032	+				-0.8
1,385,032	+				-0.5
1,385,033	-				+0.6
1,385,033	-				-2.4
1,385,033	-				+0.0
1,385,041	+				-0.0
1,385,042	-				+0.1
1,385,042	-				+0.3
1,385,052	+				-0.1
1,385,052	+				+0.3
1,385,052	+				+1.7
1,385,053	-				-1.2
1,385,053	-				+1.6
1,385,053	-				-0.0
1,385,148	+				-1.2
1,385,149	-				+0.4
1,385,149	-				+1.2
1,385,149	-				+0.2
1,385,149	-				+0.6
1,385,149	-				+0.4
1,385,149	-				+1.6
1,385,149	-				+0.0
1,385,149	-				+0.2
1,385,149	-				-0.4
1,385,149	-				-0.4
1,385,149	-				+0.2
1,385,149	-				+1.0
1,385,149	-				-0.6
1,385,149	-				-0.0
1,385,287	+				+1.4
1,385,303	+				-0.1
1,385,795	+		Psyr_1227	0.41	-1.2
1,385,795	+		Psyr_1227	0.41	+0.6
1,385,795	+		Psyr_1227	0.41	-1.2
1,385,795	+		Psyr_1227	0.41	+0.6
1,385,797	+		Psyr_1227	0.42	+1.5
1,385,797	+		Psyr_1227	0.42	-0.0
1,385,799	+		Psyr_1227	0.42	-0.5
1,385,799	+		Psyr_1227	0.42	+1.0
1,385,799	+		Psyr_1227	0.42	+2.0