Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5133

Experiment: KB with Berberine 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 250 ug/ml
6,088,643	-				-0.2
6,088,654	-				+0.6
6,088,654	-				+0.5
6,088,654	-				-0.4
6,088,654	-				+0.8
6,088,654	-				-0.7
6,088,654	-				+1.2
6,088,799	+				-1.2
6,088,807	+				+0.8
6,088,807	+				+0.1
6,088,817	+				-1.7
6,088,831	-				+1.1
6,088,904	-				-1.2
6,088,927	+				-0.9
6,088,928	-				-0.7
6,088,962	+				-0.9
6,088,987	-				-1.9
6,088,987	-				-0.6
6,089,083	-				-0.3
6,089,102	+				-0.7
6,089,102	+				-0.1
6,089,102	+				-0.3
6,089,102	+				-2.2
6,089,102	+				+0.2
6,089,102	+				-0.3
6,089,102	+				-0.6
6,089,103	-				+0.3
6,089,103	-				-0.2
6,089,103	-				+0.1
6,089,103	-				+0.1
6,089,103	-				-1.0
6,089,103	-				-0.5
6,089,103	-				-0.7
6,089,103	-				-0.3
6,089,103	-				+1.0
6,089,182	+				-0.5
6,089,182	+				+1.0
6,089,182	+				-0.9
6,089,182	+				-0.8
6,089,183	-				+1.9
6,089,183	-				-0.6
6,089,769	+		Psyr_5133	0.43	-0.5
6,089,769	+		Psyr_5133	0.43	-0.5
6,089,770	-		Psyr_5133	0.43	+0.3
6,089,770	-		Psyr_5133	0.43	-0.9
6,089,777	+		Psyr_5133	0.43	+0.1
6,089,777	+		Psyr_5133	0.43	+1.1
6,089,778	-		Psyr_5133	0.44	-1.2
6,090,043	-		Psyr_5133	0.63	-0.9
6,090,043	-		Psyr_5133	0.63	-0.9
6,090,046	+		Psyr_5133	0.63	-1.5
6,090,046	+		Psyr_5133	0.63	-1.2
6,090,046	+		Psyr_5133	0.63	+1.1
6,090,046	+		Psyr_5133	0.63	-0.9
6,090,047	-		Psyr_5133	0.63	-1.2
6,090,047	-		Psyr_5133	0.63	+0.1
6,090,047	-		Psyr_5133	0.63	-0.5
6,090,047	-		Psyr_5133	0.63	-0.9
6,090,047	-		Psyr_5133	0.63	-0.5
6,090,315	+		Psyr_5133	0.83	-1.5
6,090,315	+		Psyr_5133	0.83	-0.9
6,090,316	-		Psyr_5133	0.83	-1.9
6,090,393	+		Psyr_5133	0.88	-0.5
6,090,609	-				-1.4
6,090,616	-				-0.6
6,090,616	-				+1.1
6,090,627	-				-0.3
6,090,627	-				+0.3