Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5032

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5031 and Psyr_5032 are separated by 167 nucleotidesPsyr_5032 and Psyr_5033 are separated by 60 nucleotides Psyr_5031: Psyr_5031 - 4-hydroxybenzoate octaprenyltransferase, at 5,969,964 to 5,970,854 _5031 Psyr_5032: Psyr_5032 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 5,971,022 to 5,971,711 _5032 Psyr_5033: Psyr_5033 - PAS/PAC sensor signal transduction histidine kinase, at 5,971,772 to 5,973,094 _5033 Position (kb) 5971 5972Strain fitness (log2 ratio) -2 -1 0 1 2at 5970.884 kb on + strandat 5970.884 kb on + strandat 5970.884 kb on + strandat 5970.884 kb on + strandat 5970.885 kb on - strandat 5970.885 kb on - strandat 5970.885 kb on - strandat 5970.889 kb on - strandat 5970.889 kb on - strandat 5970.937 kb on + strandat 5970.970 kb on - strandat 5970.970 kb on - strandat 5970.982 kb on + strandat 5970.982 kb on + strandat 5970.982 kb on + strandat 5970.982 kb on + strandat 5970.983 kb on - strandat 5970.983 kb on - strandat 5970.983 kb on - strandat 5970.983 kb on - strandat 5971.001 kb on + strandat 5971.001 kb on + strandat 5971.002 kb on - strandat 5971.002 kb on - strandat 5971.002 kb on - strandat 5971.112 kb on - strand, within Psyr_5032at 5971.112 kb on - strand, within Psyr_5032at 5971.112 kb on - strand, within Psyr_5032at 5971.112 kb on - strand, within Psyr_5032at 5971.328 kb on + strand, within Psyr_5032at 5971.328 kb on + strand, within Psyr_5032at 5971.328 kb on + strand, within Psyr_5032at 5971.328 kb on + strand, within Psyr_5032at 5971.328 kb on + strand, within Psyr_5032at 5971.328 kb on + strand, within Psyr_5032at 5971.329 kb on - strand, within Psyr_5032at 5971.329 kb on - strand, within Psyr_5032at 5971.329 kb on - strand, within Psyr_5032at 5971.329 kb on - strand, within Psyr_5032at 5971.329 kb on - strand, within Psyr_5032at 5971.329 kb on - strand, within Psyr_5032at 5971.544 kb on + strand, within Psyr_5032at 5971.544 kb on + strand, within Psyr_5032at 5971.572 kb on + strand, within Psyr_5032at 5971.573 kb on - strand, within Psyr_5032at 5971.589 kb on + strand, within Psyr_5032at 5971.589 kb on + strand, within Psyr_5032at 5971.589 kb on + strand, within Psyr_5032at 5971.589 kb on + strand, within Psyr_5032at 5971.590 kb on - strand, within Psyr_5032at 5971.590 kb on - strand, within Psyr_5032at 5971.590 kb on - strand, within Psyr_5032at 5971.652 kb on + strandat 5971.653 kb on - strandat 5971.763 kb on + strandat 5971.770 kb on - strandat 5971.770 kb on - strandat 5971.770 kb on - strandat 5971.860 kb on - strandat 5971.892 kb on + strandat 5971.892 kb on + strandat 5971.892 kb on + strandat 5971.893 kb on - strandat 5971.893 kb on - strandat 5971.893 kb on - strandat 5971.893 kb on - strandat 5972.009 kb on + strand, within Psyr_5033at 5972.009 kb on + strand, within Psyr_5033at 5972.009 kb on + strand, within Psyr_5033at 5972.009 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.253 kb on - strand, within Psyr_5033at 5972.253 kb on - strand, within Psyr_5033at 5972.359 kb on - strand, within Psyr_5033at 5972.359 kb on - strand, within Psyr_5033at 5972.450 kb on + strand, within Psyr_5033at 5972.592 kb on - strand, within Psyr_5033

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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5,970,884 + +0.2
5,970,884 + -0.1
5,970,884 + +0.1
5,970,884 + -0.9
5,970,885 - -0.0
5,970,885 - -2.3
5,970,885 - -0.9
5,970,889 - -0.0
5,970,889 - +1.5
5,970,937 + -0.7
5,970,970 - +0.3
5,970,970 - +0.8
5,970,982 + -1.1
5,970,982 + -1.0
5,970,982 + -0.4
5,970,982 + -0.3
5,970,983 - +1.1
5,970,983 - +0.1
5,970,983 - -1.3
5,970,983 - +0.3
5,971,001 + +0.6
5,971,001 + +0.7
5,971,002 - -0.6
5,971,002 - +1.5
5,971,002 - +0.2
5,971,112 - Psyr_5032 0.13 +0.0
5,971,112 - Psyr_5032 0.13 -2.0
5,971,112 - Psyr_5032 0.13 -0.2
5,971,112 - Psyr_5032 0.13 +0.3
5,971,328 + Psyr_5032 0.44 +0.4
5,971,328 + Psyr_5032 0.44 -0.2
5,971,328 + Psyr_5032 0.44 -1.9
5,971,328 + Psyr_5032 0.44 -1.4
5,971,328 + Psyr_5032 0.44 -0.2
5,971,328 + Psyr_5032 0.44 +0.6
5,971,329 - Psyr_5032 0.44 -0.8
5,971,329 - Psyr_5032 0.44 +1.5
5,971,329 - Psyr_5032 0.44 -0.2
5,971,329 - Psyr_5032 0.44 +0.7
5,971,329 - Psyr_5032 0.44 +0.1
5,971,329 - Psyr_5032 0.44 +1.1
5,971,544 + Psyr_5032 0.76 -0.0
5,971,544 + Psyr_5032 0.76 -1.0
5,971,572 + Psyr_5032 0.80 -1.3
5,971,573 - Psyr_5032 0.80 +0.8
5,971,589 + Psyr_5032 0.82 -1.1
5,971,589 + Psyr_5032 0.82 -1.5
5,971,589 + Psyr_5032 0.82 -1.3
5,971,589 + Psyr_5032 0.82 +0.5
5,971,590 - Psyr_5032 0.82 -0.4
5,971,590 - Psyr_5032 0.82 +0.8
5,971,590 - Psyr_5032 0.82 -0.8
5,971,652 + -1.5
5,971,653 - +1.7
5,971,763 + -0.4
5,971,770 - -0.9
5,971,770 - +0.8
5,971,770 - -0.9
5,971,860 - +0.3
5,971,892 + -0.1
5,971,892 + -0.0
5,971,892 + -1.0
5,971,893 - -1.4
5,971,893 - +0.2
5,971,893 - +0.6
5,971,893 - +0.8
5,972,009 + Psyr_5033 0.18 -0.9
5,972,009 + Psyr_5033 0.18 -0.9
5,972,009 + Psyr_5033 0.18 +0.2
5,972,009 + Psyr_5033 0.18 +0.4
5,972,234 + Psyr_5033 0.35 +1.1
5,972,234 + Psyr_5033 0.35 -1.0
5,972,234 + Psyr_5033 0.35 +1.9
5,972,234 + Psyr_5033 0.35 -0.6
5,972,234 + Psyr_5033 0.35 -0.9
5,972,234 + Psyr_5033 0.35 -1.0
5,972,234 + Psyr_5033 0.35 +0.1
5,972,253 - Psyr_5033 0.36 +1.3
5,972,253 - Psyr_5033 0.36 +0.4
5,972,359 - Psyr_5033 0.44 +1.3
5,972,359 - Psyr_5033 0.44 -1.2
5,972,450 + Psyr_5033 0.51 -0.3
5,972,592 - Psyr_5033 0.62 +0.4

Or see this region's nucleotide sequence