Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4915 and Psyr_4916 are separated by 295 nucleotides Psyr_4916 and Psyr_4917 are separated by 442 nucleotides
Psyr_4915: Psyr_4915 - conserved hypothetical protein, at 5,826,616 to 5,827,887
_4915
Psyr_4916: Psyr_4916 - conserved hypothetical protein, at 5,828,183 to 5,828,509
_4916
Psyr_4917: Psyr_4917 - Heat shock protein DnaJ, N-terminal, at 5,828,952 to 5,829,977
_4917
Position (kb) 5828
5829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.263 kb on + strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.264 kb on - strand, within Psyr_4915 at 5827.363 kb on + strand, within Psyr_4915 at 5827.363 kb on + strand, within Psyr_4915 at 5827.364 kb on - strand, within Psyr_4915 at 5827.364 kb on - strand, within Psyr_4915 at 5827.364 kb on - strand, within Psyr_4915 at 5827.364 kb on - strand, within Psyr_4915 at 5827.364 kb on - strand, within Psyr_4915 at 5827.365 kb on + strand, within Psyr_4915 at 5827.487 kb on + strand, within Psyr_4915 at 5827.487 kb on + strand, within Psyr_4915 at 5827.488 kb on - strand, within Psyr_4915 at 5827.488 kb on - strand, within Psyr_4915 at 5827.488 kb on - strand, within Psyr_4915 at 5827.567 kb on + strand, within Psyr_4915 at 5827.567 kb on + strand, within Psyr_4915 at 5827.567 kb on + strand, within Psyr_4915 at 5827.567 kb on + strand, within Psyr_4915 at 5827.567 kb on + strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.568 kb on - strand, within Psyr_4915 at 5827.621 kb on + strand, within Psyr_4915 at 5827.622 kb on - strand, within Psyr_4915 at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.792 kb on + strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.793 kb on - strand at 5827.810 kb on + strand at 5827.810 kb on + strand at 5827.849 kb on - strand at 5827.849 kb on - strand at 5827.915 kb on - strand at 5827.915 kb on - strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.050 kb on + strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.051 kb on - strand at 5828.055 kb on - strand at 5828.091 kb on + strand at 5828.418 kb on + strand, within Psyr_4916 at 5828.418 kb on + strand, within Psyr_4916 at 5828.418 kb on + strand, within Psyr_4916 at 5828.418 kb on + strand, within Psyr_4916 at 5828.419 kb on - strand, within Psyr_4916 at 5828.419 kb on - strand, within Psyr_4916 at 5828.419 kb on - strand, within Psyr_4916 at 5828.419 kb on - strand, within Psyr_4916 at 5828.498 kb on + strand at 5828.498 kb on + strand at 5828.499 kb on - strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.513 kb on + strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.514 kb on - strand at 5828.599 kb on - strand at 5828.599 kb on - strand at 5828.599 kb on - strand at 5828.640 kb on + strand at 5828.640 kb on + strand at 5828.641 kb on - strand at 5828.688 kb on - strand at 5828.688 kb on - strand at 5828.688 kb on - strand at 5828.688 kb on - strand at 5828.688 kb on - strand at 5828.707 kb on - strand at 5828.723 kb on - strand at 5828.723 kb on - strand at 5828.743 kb on + strand at 5828.743 kb on + strand at 5828.743 kb on + strand at 5828.743 kb on + strand at 5828.743 kb on + strand at 5828.744 kb on - strand at 5828.744 kb on - strand at 5828.744 kb on - strand at 5828.744 kb on - strand at 5828.744 kb on - strand at 5828.744 kb on - strand at 5828.760 kb on - strand at 5828.760 kb on - strand at 5828.861 kb on + strand at 5828.861 kb on + strand at 5828.862 kb on - strand at 5828.862 kb on - strand at 5828.890 kb on + strand at 5828.920 kb on - strand at 5828.953 kb on + strand at 5828.953 kb on + strand at 5828.953 kb on + strand at 5828.954 kb on - strand at 5829.022 kb on + strand at 5829.022 kb on + strand at 5829.022 kb on + strand at 5829.022 kb on + strand at 5829.022 kb on + strand at 5829.022 kb on + strand at 5829.023 kb on - strand at 5829.023 kb on - strand at 5829.112 kb on + strand, within Psyr_4917 at 5829.112 kb on + strand, within Psyr_4917 at 5829.112 kb on + strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.113 kb on - strand, within Psyr_4917 at 5829.124 kb on + strand, within Psyr_4917 at 5829.125 kb on - strand, within Psyr_4917 at 5829.125 kb on - strand, within Psyr_4917 at 5829.223 kb on + strand, within Psyr_4917 at 5829.223 kb on + strand, within Psyr_4917 at 5829.224 kb on - strand, within Psyr_4917 at 5829.224 kb on - strand, within Psyr_4917 at 5829.224 kb on - strand, within Psyr_4917 at 5829.224 kb on - strand, within Psyr_4917 at 5829.224 kb on - strand, within Psyr_4917 at 5829.304 kb on + strand, within Psyr_4917 at 5829.305 kb on - strand, within Psyr_4917 at 5829.305 kb on - strand, within Psyr_4917 at 5829.305 kb on - strand, within Psyr_4917 at 5829.305 kb on - strand, within Psyr_4917 at 5829.399 kb on + strand, within Psyr_4917
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 5,827,263 + Psyr_4915 0.51 +1.1 5,827,263 + Psyr_4915 0.51 +0.4 5,827,263 + Psyr_4915 0.51 +0.6 5,827,263 + Psyr_4915 0.51 -0.9 5,827,263 + Psyr_4915 0.51 -0.3 5,827,263 + Psyr_4915 0.51 +0.0 5,827,263 + Psyr_4915 0.51 -0.8 5,827,263 + Psyr_4915 0.51 +0.1 5,827,263 + Psyr_4915 0.51 -0.4 5,827,263 + Psyr_4915 0.51 -2.3 5,827,263 + Psyr_4915 0.51 -0.2 5,827,264 - Psyr_4915 0.51 -1.1 5,827,264 - Psyr_4915 0.51 +1.3 5,827,264 - Psyr_4915 0.51 +1.8 5,827,264 - Psyr_4915 0.51 +0.9 5,827,264 - Psyr_4915 0.51 -0.9 5,827,264 - Psyr_4915 0.51 +0.5 5,827,264 - Psyr_4915 0.51 -1.1 5,827,264 - Psyr_4915 0.51 -0.8 5,827,264 - Psyr_4915 0.51 -1.1 5,827,264 - Psyr_4915 0.51 +0.4 5,827,264 - Psyr_4915 0.51 -0.9 5,827,264 - Psyr_4915 0.51 -1.7 5,827,264 - Psyr_4915 0.51 -0.4 5,827,363 + Psyr_4915 0.59 -0.6 5,827,363 + Psyr_4915 0.59 -0.4 5,827,364 - Psyr_4915 0.59 -0.3 5,827,364 - Psyr_4915 0.59 -0.6 5,827,364 - Psyr_4915 0.59 -0.2 5,827,364 - Psyr_4915 0.59 +1.0 5,827,364 - Psyr_4915 0.59 -0.2 5,827,365 + Psyr_4915 0.59 -0.3 5,827,487 + Psyr_4915 0.68 -1.6 5,827,487 + Psyr_4915 0.68 +2.7 5,827,488 - Psyr_4915 0.69 +0.1 5,827,488 - Psyr_4915 0.69 -1.6 5,827,488 - Psyr_4915 0.69 -1.1 5,827,567 + Psyr_4915 0.75 +2.7 5,827,567 + Psyr_4915 0.75 -1.2 5,827,567 + Psyr_4915 0.75 +0.4 5,827,567 + Psyr_4915 0.75 +0.5 5,827,567 + Psyr_4915 0.75 -0.5 5,827,568 - Psyr_4915 0.75 +0.3 5,827,568 - Psyr_4915 0.75 -0.8 5,827,568 - Psyr_4915 0.75 +0.3 5,827,568 - Psyr_4915 0.75 -0.2 5,827,568 - Psyr_4915 0.75 -0.2 5,827,568 - Psyr_4915 0.75 +0.1 5,827,568 - Psyr_4915 0.75 +0.6 5,827,621 + Psyr_4915 0.79 -1.0 5,827,622 - Psyr_4915 0.79 +0.1 5,827,792 + -1.9 5,827,792 + -0.0 5,827,792 + +0.3 5,827,792 + -0.1 5,827,792 + -0.4 5,827,792 + +0.3 5,827,792 + -1.9 5,827,792 + +1.9 5,827,792 + +0.4 5,827,792 + +0.2 5,827,792 + +0.3 5,827,792 + +0.4 5,827,792 + +0.2 5,827,792 + -0.3 5,827,792 + +0.5 5,827,792 + -0.5 5,827,792 + -2.4 5,827,792 + -0.3 5,827,792 + -0.4 5,827,793 - +0.7 5,827,793 - +0.3 5,827,793 - +0.9 5,827,793 - -1.2 5,827,793 - +0.1 5,827,793 - +0.6 5,827,793 - +0.1 5,827,793 - +0.4 5,827,793 - -1.1 5,827,793 - +0.5 5,827,793 - -0.1 5,827,793 - -0.3 5,827,810 + +1.0 5,827,810 + -0.7 5,827,849 - +1.6 5,827,849 - -1.9 5,827,915 - -0.7 5,827,915 - -0.3 5,828,050 + -0.4 5,828,050 + -0.0 5,828,050 + -3.5 5,828,050 + -0.3 5,828,050 + -0.8 5,828,050 + +0.3 5,828,050 + -1.2 5,828,050 + +0.5 5,828,050 + -1.7 5,828,050 + +0.5 5,828,051 - +0.1 5,828,051 - -1.5 5,828,051 - -0.8 5,828,051 - -0.2 5,828,051 - -1.1 5,828,051 - -0.5 5,828,051 - -0.5 5,828,051 - -0.3 5,828,055 - +1.7 5,828,091 + -0.7 5,828,418 + Psyr_4916 0.72 -0.6 5,828,418 + Psyr_4916 0.72 -0.2 5,828,418 + Psyr_4916 0.72 -0.7 5,828,418 + Psyr_4916 0.72 -0.5 5,828,419 - Psyr_4916 0.72 +0.1 5,828,419 - Psyr_4916 0.72 -0.6 5,828,419 - Psyr_4916 0.72 -0.6 5,828,419 - Psyr_4916 0.72 -0.5 5,828,498 + +0.1 5,828,498 + +0.1 5,828,499 - -0.9 5,828,513 + +0.8 5,828,513 + -1.0 5,828,513 + -0.4 5,828,513 + -0.6 5,828,513 + -0.2 5,828,513 + -1.1 5,828,513 + +0.1 5,828,513 + +0.1 5,828,513 + +1.1 5,828,513 + +0.5 5,828,513 + -1.4 5,828,513 + +1.0 5,828,513 + -0.3 5,828,513 + +0.5 5,828,513 + -2.4 5,828,514 - +0.2 5,828,514 - +0.4 5,828,514 - -0.5 5,828,514 - -0.1 5,828,514 - +0.3 5,828,514 - +1.3 5,828,514 - -0.3 5,828,514 - +1.1 5,828,514 - +0.5 5,828,514 - -0.4 5,828,599 - -0.1 5,828,599 - -1.4 5,828,599 - +1.1 5,828,640 + +0.1 5,828,640 + +0.8 5,828,641 - +2.1 5,828,688 - -0.2 5,828,688 - -0.5 5,828,688 - -0.1 5,828,688 - +0.6 5,828,688 - +0.3 5,828,707 - +0.1 5,828,723 - -0.2 5,828,723 - +0.5 5,828,743 + -1.0 5,828,743 + -0.4 5,828,743 + -0.3 5,828,743 + +0.2 5,828,743 + -0.9 5,828,744 - -1.0 5,828,744 - -0.6 5,828,744 - +0.3 5,828,744 - -0.9 5,828,744 - +0.2 5,828,744 - +1.6 5,828,760 - +0.2 5,828,760 - -0.8 5,828,861 + -0.4 5,828,861 + -1.2 5,828,862 - -0.1 5,828,862 - -0.7 5,828,890 + -0.7 5,828,920 - +0.3 5,828,953 + -1.4 5,828,953 + +0.7 5,828,953 + -0.3 5,828,954 - -0.5 5,829,022 + -0.5 5,829,022 + -0.8 5,829,022 + -0.6 5,829,022 + +0.2 5,829,022 + -0.3 5,829,022 + +0.6 5,829,023 - -1.0 5,829,023 - -0.1 5,829,112 + Psyr_4917 0.16 +0.6 5,829,112 + Psyr_4917 0.16 +0.9 5,829,112 + Psyr_4917 0.16 +0.7 5,829,113 - Psyr_4917 0.16 +0.4 5,829,113 - Psyr_4917 0.16 -1.2 5,829,113 - Psyr_4917 0.16 -1.7 5,829,113 - Psyr_4917 0.16 +0.3 5,829,113 - Psyr_4917 0.16 -1.0 5,829,113 - Psyr_4917 0.16 -0.9 5,829,113 - Psyr_4917 0.16 +0.3 5,829,113 - Psyr_4917 0.16 -0.1 5,829,124 + Psyr_4917 0.17 -0.4 5,829,125 - Psyr_4917 0.17 +0.5 5,829,125 - Psyr_4917 0.17 +0.6 5,829,223 + Psyr_4917 0.26 +1.4 5,829,223 + Psyr_4917 0.26 -0.8 5,829,224 - Psyr_4917 0.27 -0.5 5,829,224 - Psyr_4917 0.27 -0.0 5,829,224 - Psyr_4917 0.27 -0.5 5,829,224 - Psyr_4917 0.27 +0.3 5,829,224 - Psyr_4917 0.27 +1.1 5,829,304 + Psyr_4917 0.34 +1.6 5,829,305 - Psyr_4917 0.34 +0.4 5,829,305 - Psyr_4917 0.34 -1.0 5,829,305 - Psyr_4917 0.34 -0.5 5,829,305 - Psyr_4917 0.34 +0.2 5,829,399 + Psyr_4917 0.44 -1.1
Or see this region's nucleotide sequence