Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4881

Experiment: KB with Berberine 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4879 and Psyr_4880 are separated by 145 nucleotidesPsyr_4880 and Psyr_4881 overlap by 2 nucleotidesPsyr_4881 and Psyr_4882 are separated by 61 nucleotidesPsyr_4882 and Psyr_4883 are separated by 40 nucleotidesPsyr_4883 and Psyr_4884 are separated by 2 nucleotides Psyr_4879: Psyr_4879 - hypothetical protein, at 5,791,409 to 5,791,852 _4879 Psyr_4880: Psyr_4880 - conserved hypothetical protein, at 5,791,998 to 5,792,438 _4880 Psyr_4881: Psyr_4881 - RNA methyltransferase TrmH, group 2, at 5,792,437 to 5,792,892 _4881 Psyr_4882: Psyr_4882 - protein translocase subunit secB, at 5,792,954 to 5,793,442 _4882 Psyr_4883: Psyr_4883 - Glutaredoxin, at 5,793,483 to 5,793,734 _4883 Psyr_4884: Psyr_4884 - Rhodanese-like protein, at 5,793,737 to 5,794,150 _4884 Position (kb) 5792 5793Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5791.525 kb on + strand, within Psyr_4879at 5791.730 kb on + strand, within Psyr_4879at 5791.730 kb on + strand, within Psyr_4879at 5791.731 kb on - strand, within Psyr_4879at 5791.731 kb on - strand, within Psyr_4879at 5791.731 kb on - strand, within Psyr_4879at 5791.731 kb on - strand, within Psyr_4879at 5791.776 kb on - strand, within Psyr_4879at 5791.811 kb on - strandat 5791.817 kb on - strandat 5791.835 kb on + strandat 5791.836 kb on - strandat 5791.851 kb on - strandat 5791.938 kb on + strandat 5791.938 kb on + strandat 5791.938 kb on + strandat 5791.938 kb on + strandat 5791.938 kb on + strandat 5791.938 kb on + strandat 5791.939 kb on - strandat 5791.939 kb on - strandat 5791.942 kb on + strandat 5791.943 kb on - strandat 5791.943 kb on - strandat 5791.943 kb on - strandat 5791.943 kb on - strandat 5791.943 kb on - strandat 5791.943 kb on - strandat 5791.945 kb on + strandat 5791.945 kb on + strandat 5791.945 kb on + strandat 5791.945 kb on + strandat 5791.945 kb on + strandat 5791.945 kb on + strandat 5791.945 kb on + strandat 5791.946 kb on - strandat 5791.946 kb on - strandat 5791.946 kb on - strandat 5791.946 kb on - strandat 5791.946 kb on - strandat 5791.971 kb on + strandat 5791.971 kb on + strandat 5791.972 kb on - strandat 5791.972 kb on - strandat 5791.999 kb on + strandat 5791.999 kb on + strandat 5791.999 kb on + strandat 5791.999 kb on + strandat 5791.999 kb on + strandat 5791.999 kb on + strandat 5792.000 kb on - strandat 5792.000 kb on - strandat 5792.118 kb on + strand, within Psyr_4880at 5792.119 kb on - strand, within Psyr_4880at 5792.119 kb on - strand, within Psyr_4880at 5792.194 kb on - strand, within Psyr_4880at 5792.194 kb on - strand, within Psyr_4880at 5792.194 kb on - strand, within Psyr_4880at 5792.373 kb on + strand, within Psyr_4880at 5792.374 kb on - strand, within Psyr_4880at 5792.384 kb on + strand, within Psyr_4880at 5792.385 kb on - strand, within Psyr_4880at 5792.403 kb on - strandat 5792.403 kb on - strandat 5792.499 kb on - strand, within Psyr_4881at 5792.596 kb on + strand, within Psyr_4881at 5792.596 kb on + strand, within Psyr_4881at 5792.596 kb on + strand, within Psyr_4881at 5792.596 kb on + strand, within Psyr_4881at 5792.597 kb on - strand, within Psyr_4881at 5792.829 kb on + strand, within Psyr_4881at 5792.860 kb on + strandat 5792.860 kb on + strandat 5792.860 kb on + strandat 5792.861 kb on - strandat 5792.861 kb on - strandat 5793.010 kb on - strand, within Psyr_4882at 5793.062 kb on + strand, within Psyr_4882at 5793.062 kb on + strand, within Psyr_4882at 5793.062 kb on + strand, within Psyr_4882at 5793.062 kb on + strand, within Psyr_4882at 5793.062 kb on + strand, within Psyr_4882at 5793.063 kb on - strand, within Psyr_4882at 5793.063 kb on - strand, within Psyr_4882at 5793.093 kb on + strand, within Psyr_4882at 5793.093 kb on + strand, within Psyr_4882at 5793.094 kb on - strand, within Psyr_4882at 5793.173 kb on - strand, within Psyr_4882at 5793.243 kb on - strand, within Psyr_4882at 5793.252 kb on + strand, within Psyr_4882at 5793.252 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.374 kb on - strand, within Psyr_4882at 5793.462 kb on - strandat 5793.584 kb on + strand, within Psyr_4883at 5793.585 kb on - strand, within Psyr_4883at 5793.585 kb on - strand, within Psyr_4883at 5793.585 kb on - strand, within Psyr_4883at 5793.585 kb on - strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.694 kb on + strand, within Psyr_4883at 5793.694 kb on + strand, within Psyr_4883at 5793.704 kb on - strand, within Psyr_4883at 5793.715 kb on + strandat 5793.715 kb on + strandat 5793.864 kb on - strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml
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5,791,525 + Psyr_4879 0.26 +0.1
5,791,730 + Psyr_4879 0.72 +1.2
5,791,730 + Psyr_4879 0.72 -2.7
5,791,731 - Psyr_4879 0.73 +0.6
5,791,731 - Psyr_4879 0.73 +0.4
5,791,731 - Psyr_4879 0.73 +0.0
5,791,731 - Psyr_4879 0.73 +0.8
5,791,776 - Psyr_4879 0.83 +0.8
5,791,811 - -0.4
5,791,817 - +0.4
5,791,835 + +1.0
5,791,836 - -0.3
5,791,851 - +0.7
5,791,938 + +1.0
5,791,938 + -0.7
5,791,938 + -0.2
5,791,938 + +0.5
5,791,938 + +0.6
5,791,938 + +0.5
5,791,939 - -0.6
5,791,939 - -0.6
5,791,942 + -0.6
5,791,943 - -0.3
5,791,943 - +0.8
5,791,943 - -0.6
5,791,943 - -0.8
5,791,943 - -0.8
5,791,943 - -2.1
5,791,945 + -0.4
5,791,945 + +0.5
5,791,945 + +0.5
5,791,945 + +0.4
5,791,945 + -0.5
5,791,945 + -2.0
5,791,945 + +0.8
5,791,946 - +1.0
5,791,946 - -1.3
5,791,946 - -0.3
5,791,946 - +0.9
5,791,946 - -2.0
5,791,971 + +0.4
5,791,971 + -1.8
5,791,972 - -1.3
5,791,972 - +0.2
5,791,999 + +3.0
5,791,999 + +0.0
5,791,999 + +0.8
5,791,999 + +0.4
5,791,999 + +0.2
5,791,999 + +0.3
5,792,000 - +1.4
5,792,000 - +0.0
5,792,118 + Psyr_4880 0.27 +1.0
5,792,119 - Psyr_4880 0.27 +1.3
5,792,119 - Psyr_4880 0.27 -0.2
5,792,194 - Psyr_4880 0.44 -0.9
5,792,194 - Psyr_4880 0.44 +0.6
5,792,194 - Psyr_4880 0.44 +1.4
5,792,373 + Psyr_4880 0.85 -0.6
5,792,374 - Psyr_4880 0.85 +0.3
5,792,384 + Psyr_4880 0.88 +0.2
5,792,385 - Psyr_4880 0.88 +1.3
5,792,403 - -0.5
5,792,403 - +0.4
5,792,499 - Psyr_4881 0.14 -0.1
5,792,596 + Psyr_4881 0.35 +0.4
5,792,596 + Psyr_4881 0.35 +0.9
5,792,596 + Psyr_4881 0.35 -0.1
5,792,596 + Psyr_4881 0.35 -0.7
5,792,597 - Psyr_4881 0.35 +0.8
5,792,829 + Psyr_4881 0.86 +1.3
5,792,860 + +0.2
5,792,860 + -0.5
5,792,860 + +0.0
5,792,861 - -0.8
5,792,861 - +0.5
5,793,010 - Psyr_4882 0.11 -0.2
5,793,062 + Psyr_4882 0.22 +1.6
5,793,062 + Psyr_4882 0.22 +0.4
5,793,062 + Psyr_4882 0.22 +0.0
5,793,062 + Psyr_4882 0.22 -0.3
5,793,062 + Psyr_4882 0.22 -0.2
5,793,063 - Psyr_4882 0.22 -1.2
5,793,063 - Psyr_4882 0.22 +1.1
5,793,093 + Psyr_4882 0.28 +1.8
5,793,093 + Psyr_4882 0.28 +1.6
5,793,094 - Psyr_4882 0.29 +0.0
5,793,173 - Psyr_4882 0.45 +1.6
5,793,243 - Psyr_4882 0.59 +0.2
5,793,252 + Psyr_4882 0.61 +0.0
5,793,252 + Psyr_4882 0.61 -0.5
5,793,369 + Psyr_4882 0.85 -0.1
5,793,369 + Psyr_4882 0.85 +0.0
5,793,369 + Psyr_4882 0.85 -1.1
5,793,369 + Psyr_4882 0.85 +0.2
5,793,369 + Psyr_4882 0.85 +0.1
5,793,369 + Psyr_4882 0.85 +1.6
5,793,369 + Psyr_4882 0.85 +1.3
5,793,370 - Psyr_4882 0.85 -2.3
5,793,370 - Psyr_4882 0.85 +0.3
5,793,370 - Psyr_4882 0.85 +1.0
5,793,370 - Psyr_4882 0.85 -0.2
5,793,370 - Psyr_4882 0.85 -0.3
5,793,370 - Psyr_4882 0.85 +0.8
5,793,373 + Psyr_4882 0.86 -1.1
5,793,373 + Psyr_4882 0.86 +0.6
5,793,373 + Psyr_4882 0.86 +0.3
5,793,373 + Psyr_4882 0.86 +0.3
5,793,374 - Psyr_4882 0.86 +0.0
5,793,462 - -0.4
5,793,584 + Psyr_4883 0.40 -1.6
5,793,585 - Psyr_4883 0.40 -0.6
5,793,585 - Psyr_4883 0.40 -1.3
5,793,585 - Psyr_4883 0.40 +0.6
5,793,585 - Psyr_4883 0.40 -0.6
5,793,687 + Psyr_4883 0.81 -0.4
5,793,687 + Psyr_4883 0.81 -0.2
5,793,687 + Psyr_4883 0.81 +0.1
5,793,687 + Psyr_4883 0.81 -0.6
5,793,688 - Psyr_4883 0.81 +1.0
5,793,688 - Psyr_4883 0.81 +0.4
5,793,688 - Psyr_4883 0.81 -1.0
5,793,688 - Psyr_4883 0.81 +0.5
5,793,688 - Psyr_4883 0.81 -0.7
5,793,688 - Psyr_4883 0.81 +1.0
5,793,688 - Psyr_4883 0.81 -1.5
5,793,688 - Psyr_4883 0.81 -1.8
5,793,688 - Psyr_4883 0.81 -0.6
5,793,688 - Psyr_4883 0.81 -0.1
5,793,694 + Psyr_4883 0.84 -0.4
5,793,694 + Psyr_4883 0.84 -0.3
5,793,704 - Psyr_4883 0.88 -2.3
5,793,715 + -0.4
5,793,715 + +0.4
5,793,864 - Psyr_4884 0.31 -2.0
5,793,885 + Psyr_4884 0.36 -0.6
5,793,885 + Psyr_4884 0.36 -1.0
5,793,885 + Psyr_4884 0.36 -0.4
5,793,885 + Psyr_4884 0.36 -3.3
5,793,886 - Psyr_4884 0.36 -1.6
5,793,886 - Psyr_4884 0.36 -2.6
5,793,886 - Psyr_4884 0.36 -0.8
5,793,886 - Psyr_4884 0.36 -1.8
5,793,886 - Psyr_4884 0.36 -2.0

Or see this region's nucleotide sequence