Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4832 and Psyr_4833 are separated by 54 nucleotides Psyr_4833 and Psyr_4834 are separated by 102 nucleotides
Psyr_4832: Psyr_4832 - histidine ammonia-lyase, at 5,734,563 to 5,736,104
_4832
Psyr_4833: Psyr_4833 - histidine ammonia-lyase, at 5,736,159 to 5,737,706
_4833
Psyr_4834: Psyr_4834 - histidine:proton symporter, AAT family, at 5,737,809 to 5,739,185
_4834
Position (kb) 5736
5737
5738 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5735.721 kb on + strand, within Psyr_4832 at 5735.721 kb on + strand, within Psyr_4832 at 5735.722 kb on - strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.784 kb on + strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.785 kb on - strand, within Psyr_4832 at 5735.988 kb on + strand at 5735.989 kb on - strand at 5736.100 kb on + strand at 5736.100 kb on + strand at 5736.100 kb on + strand at 5736.101 kb on - strand at 5736.101 kb on - strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.102 kb on + strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.103 kb on - strand at 5736.113 kb on + strand at 5736.113 kb on + strand at 5736.114 kb on - strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.139 kb on + strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.140 kb on - strand at 5736.150 kb on - strand at 5736.150 kb on - strand at 5736.169 kb on + strand at 5736.169 kb on + strand at 5736.169 kb on + strand at 5736.169 kb on + strand at 5736.170 kb on - strand at 5736.170 kb on - strand at 5736.170 kb on - strand at 5736.231 kb on + strand at 5736.231 kb on + strand at 5736.231 kb on + strand at 5736.232 kb on - strand at 5736.232 kb on - strand at 5736.576 kb on - strand, within Psyr_4833 at 5736.576 kb on - strand, within Psyr_4833 at 5736.656 kb on + strand, within Psyr_4833 at 5736.657 kb on - strand, within Psyr_4833 at 5737.495 kb on + strand, within Psyr_4833 at 5737.496 kb on - strand, within Psyr_4833 at 5737.496 kb on - strand, within Psyr_4833 at 5737.600 kb on - strand at 5737.600 kb on - strand at 5737.785 kb on + strand at 5737.786 kb on - strand at 5737.886 kb on + strand at 5737.899 kb on + strand at 5737.900 kb on - strand at 5737.939 kb on + strand at 5737.940 kb on - strand at 5737.950 kb on + strand, within Psyr_4834 at 5737.951 kb on - strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.974 kb on + strand, within Psyr_4834 at 5737.975 kb on - strand, within Psyr_4834 at 5737.975 kb on - strand, within Psyr_4834 at 5737.975 kb on - strand, within Psyr_4834 at 5737.975 kb on - strand, within Psyr_4834 at 5737.975 kb on - strand, within Psyr_4834 at 5738.040 kb on + strand, within Psyr_4834 at 5738.053 kb on - strand, within Psyr_4834 at 5738.053 kb on - strand, within Psyr_4834 at 5738.053 kb on - strand, within Psyr_4834 at 5738.053 kb on - strand, within Psyr_4834 at 5738.091 kb on + strand, within Psyr_4834 at 5738.091 kb on + strand, within Psyr_4834 at 5738.092 kb on - strand, within Psyr_4834 at 5738.092 kb on - strand, within Psyr_4834 at 5738.092 kb on - strand, within Psyr_4834 at 5738.092 kb on - strand, within Psyr_4834 at 5738.092 kb on - strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.145 kb on + strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.146 kb on - strand, within Psyr_4834 at 5738.553 kb on + strand, within Psyr_4834 at 5738.553 kb on + strand, within Psyr_4834 at 5738.553 kb on + strand, within Psyr_4834 at 5738.553 kb on + strand, within Psyr_4834 at 5738.553 kb on + strand, within Psyr_4834 at 5738.554 kb on - strand, within Psyr_4834 at 5738.554 kb on - strand, within Psyr_4834 at 5738.586 kb on + strand, within Psyr_4834
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 5,735,721 + Psyr_4832 0.75 +0.7 5,735,721 + Psyr_4832 0.75 +0.5 5,735,722 - Psyr_4832 0.75 +0.4 5,735,784 + Psyr_4832 0.79 -0.2 5,735,784 + Psyr_4832 0.79 +0.0 5,735,784 + Psyr_4832 0.79 -0.2 5,735,784 + Psyr_4832 0.79 +1.0 5,735,784 + Psyr_4832 0.79 -0.6 5,735,784 + Psyr_4832 0.79 -1.0 5,735,784 + Psyr_4832 0.79 +1.0 5,735,784 + Psyr_4832 0.79 -1.0 5,735,784 + Psyr_4832 0.79 -0.3 5,735,784 + Psyr_4832 0.79 +0.4 5,735,784 + Psyr_4832 0.79 +1.4 5,735,785 - Psyr_4832 0.79 +1.1 5,735,785 - Psyr_4832 0.79 -1.0 5,735,785 - Psyr_4832 0.79 +0.2 5,735,785 - Psyr_4832 0.79 +3.0 5,735,785 - Psyr_4832 0.79 -0.2 5,735,785 - Psyr_4832 0.79 +0.5 5,735,785 - Psyr_4832 0.79 -0.1 5,735,785 - Psyr_4832 0.79 +0.2 5,735,785 - Psyr_4832 0.79 -0.3 5,735,785 - Psyr_4832 0.79 +0.6 5,735,785 - Psyr_4832 0.79 -2.5 5,735,785 - Psyr_4832 0.79 -0.0 5,735,785 - Psyr_4832 0.79 -0.5 5,735,785 - Psyr_4832 0.79 -0.1 5,735,785 - Psyr_4832 0.79 +0.3 5,735,785 - Psyr_4832 0.79 +0.4 5,735,785 - Psyr_4832 0.79 +0.6 5,735,785 - Psyr_4832 0.79 +2.1 5,735,785 - Psyr_4832 0.79 -0.0 5,735,785 - Psyr_4832 0.79 -0.2 5,735,785 - Psyr_4832 0.79 -0.8 5,735,988 + +0.2 5,735,989 - +0.4 5,736,100 + +0.1 5,736,100 + -0.2 5,736,100 + -1.3 5,736,101 - +0.1 5,736,101 - -0.2 5,736,102 + +1.1 5,736,102 + -0.8 5,736,102 + +0.3 5,736,102 + -1.0 5,736,102 + -1.2 5,736,103 - -1.5 5,736,103 - +0.4 5,736,103 - -0.6 5,736,103 - +1.0 5,736,103 - +0.2 5,736,113 + -0.2 5,736,113 + +1.0 5,736,114 - -0.6 5,736,139 + -0.4 5,736,139 + -0.3 5,736,139 + +2.0 5,736,139 + -0.0 5,736,139 + -2.1 5,736,140 - -1.2 5,736,140 - -1.1 5,736,140 - -1.0 5,736,140 - +0.2 5,736,140 - -0.4 5,736,140 - +0.7 5,736,150 - +0.5 5,736,150 - -0.6 5,736,169 + -0.5 5,736,169 + -0.4 5,736,169 + -0.3 5,736,169 + +0.2 5,736,170 - -0.4 5,736,170 - +0.4 5,736,170 - +0.5 5,736,231 + -0.4 5,736,231 + +0.1 5,736,231 + +1.1 5,736,232 - +2.0 5,736,232 - -0.8 5,736,576 - Psyr_4833 0.27 -1.0 5,736,576 - Psyr_4833 0.27 -1.0 5,736,656 + Psyr_4833 0.32 +0.2 5,736,657 - Psyr_4833 0.32 -0.7 5,737,495 + Psyr_4833 0.86 -0.2 5,737,496 - Psyr_4833 0.86 +0.7 5,737,496 - Psyr_4833 0.86 -0.3 5,737,600 - +0.2 5,737,600 - +1.3 5,737,785 + -1.3 5,737,786 - -0.6 5,737,886 + +0.4 5,737,899 + +1.6 5,737,900 - +0.2 5,737,939 + +1.7 5,737,940 - +0.2 5,737,950 + Psyr_4834 0.10 +0.1 5,737,951 - Psyr_4834 0.10 +0.2 5,737,974 + Psyr_4834 0.12 -0.1 5,737,974 + Psyr_4834 0.12 -1.5 5,737,974 + Psyr_4834 0.12 +1.3 5,737,974 + Psyr_4834 0.12 +0.6 5,737,974 + Psyr_4834 0.12 +1.5 5,737,974 + Psyr_4834 0.12 +0.4 5,737,974 + Psyr_4834 0.12 +1.8 5,737,974 + Psyr_4834 0.12 +1.0 5,737,975 - Psyr_4834 0.12 -1.1 5,737,975 - Psyr_4834 0.12 -1.0 5,737,975 - Psyr_4834 0.12 +0.3 5,737,975 - Psyr_4834 0.12 +0.8 5,737,975 - Psyr_4834 0.12 +0.0 5,738,040 + Psyr_4834 0.17 -1.6 5,738,053 - Psyr_4834 0.18 -0.2 5,738,053 - Psyr_4834 0.18 -0.5 5,738,053 - Psyr_4834 0.18 -1.3 5,738,053 - Psyr_4834 0.18 +2.6 5,738,091 + Psyr_4834 0.20 -0.5 5,738,091 + Psyr_4834 0.20 +0.3 5,738,092 - Psyr_4834 0.21 +0.1 5,738,092 - Psyr_4834 0.21 +0.7 5,738,092 - Psyr_4834 0.21 +0.7 5,738,092 - Psyr_4834 0.21 -1.6 5,738,092 - Psyr_4834 0.21 -0.0 5,738,145 + Psyr_4834 0.24 +1.2 5,738,145 + Psyr_4834 0.24 +0.4 5,738,145 + Psyr_4834 0.24 +1.4 5,738,145 + Psyr_4834 0.24 +1.6 5,738,145 + Psyr_4834 0.24 +1.5 5,738,145 + Psyr_4834 0.24 +1.7 5,738,145 + Psyr_4834 0.24 +0.3 5,738,145 + Psyr_4834 0.24 -1.1 5,738,145 + Psyr_4834 0.24 +1.8 5,738,145 + Psyr_4834 0.24 -0.7 5,738,145 + Psyr_4834 0.24 +0.2 5,738,145 + Psyr_4834 0.24 -0.3 5,738,145 + Psyr_4834 0.24 +1.1 5,738,145 + Psyr_4834 0.24 +1.1 5,738,146 - Psyr_4834 0.24 +1.6 5,738,146 - Psyr_4834 0.24 -0.6 5,738,146 - Psyr_4834 0.24 +0.2 5,738,146 - Psyr_4834 0.24 +0.7 5,738,146 - Psyr_4834 0.24 -0.7 5,738,146 - Psyr_4834 0.24 +2.1 5,738,146 - Psyr_4834 0.24 -0.3 5,738,146 - Psyr_4834 0.24 +0.6 5,738,553 + Psyr_4834 0.54 +0.7 5,738,553 + Psyr_4834 0.54 +0.1 5,738,553 + Psyr_4834 0.54 +0.1 5,738,553 + Psyr_4834 0.54 +0.1 5,738,553 + Psyr_4834 0.54 -0.6 5,738,554 - Psyr_4834 0.54 +0.3 5,738,554 - Psyr_4834 0.54 -1.2 5,738,586 + Psyr_4834 0.56 +1.5
Or see this region's nucleotide sequence