Experiment: KB with Berberine 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4793 and Psyr_4794 are separated by 20 nucleotides Psyr_4794 and Psyr_4795 are separated by 81 nucleotides
Psyr_4793: Psyr_4793 - transcriptional regulator, ArsR family, at 5,681,724 to 5,682,719
_4793
Psyr_4794: Psyr_4794 - methionine adenosyltransferase, at 5,682,740 to 5,683,930
_4794
Psyr_4795: Psyr_4795 - Lysine exporter protein (LYSE/YGGA), at 5,684,012 to 5,684,632
_4795
Position (kb) 5682
5683
5684 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.055 kb on + strand, within Psyr_4793 at 5682.171 kb on + strand, within Psyr_4793 at 5682.171 kb on + strand, within Psyr_4793 at 5682.238 kb on + strand, within Psyr_4793 at 5682.238 kb on + strand, within Psyr_4793 at 5682.490 kb on + strand, within Psyr_4793 at 5682.490 kb on + strand, within Psyr_4793 at 5682.490 kb on + strand, within Psyr_4793 at 5682.490 kb on + strand, within Psyr_4793 at 5682.490 kb on + strand, within Psyr_4793 at 5682.490 kb on + strand, within Psyr_4793 at 5682.527 kb on + strand, within Psyr_4793 at 5682.527 kb on + strand, within Psyr_4793 at 5682.622 kb on + strand at 5682.642 kb on + strand at 5682.642 kb on + strand at 5682.642 kb on + strand at 5682.642 kb on + strand at 5682.642 kb on + strand at 5682.642 kb on + strand at 5682.642 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.646 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.652 kb on + strand at 5682.656 kb on + strand at 5682.656 kb on + strand at 5682.656 kb on + strand at 5683.928 kb on + strand at 5684.069 kb on + strand at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.139 kb on + strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.140 kb on - strand, within Psyr_4795 at 5684.270 kb on - strand, within Psyr_4795 at 5684.363 kb on + strand, within Psyr_4795 at 5684.363 kb on + strand, within Psyr_4795 at 5684.364 kb on - strand, within Psyr_4795 at 5684.364 kb on - strand, within Psyr_4795 at 5684.364 kb on - strand, within Psyr_4795 at 5684.379 kb on + strand, within Psyr_4795 at 5684.379 kb on + strand, within Psyr_4795 at 5684.388 kb on + strand, within Psyr_4795 at 5684.389 kb on - strand, within Psyr_4795 at 5684.389 kb on - strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.434 kb on + strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.435 kb on - strand, within Psyr_4795 at 5684.545 kb on + strand, within Psyr_4795 at 5684.609 kb on + strand at 5684.609 kb on + strand at 5684.609 kb on + strand at 5684.660 kb on + strand at 5684.661 kb on - strand at 5684.661 kb on - strand at 5684.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 250 ug/ml remove 5,682,055 + Psyr_4793 0.33 -0.2 5,682,055 + Psyr_4793 0.33 -0.4 5,682,055 + Psyr_4793 0.33 -2.1 5,682,055 + Psyr_4793 0.33 +0.2 5,682,055 + Psyr_4793 0.33 -0.3 5,682,055 + Psyr_4793 0.33 -0.5 5,682,171 + Psyr_4793 0.45 -0.8 5,682,171 + Psyr_4793 0.45 -0.6 5,682,238 + Psyr_4793 0.52 +0.6 5,682,238 + Psyr_4793 0.52 -0.3 5,682,490 + Psyr_4793 0.77 -0.3 5,682,490 + Psyr_4793 0.77 -0.1 5,682,490 + Psyr_4793 0.77 -0.6 5,682,490 + Psyr_4793 0.77 +0.4 5,682,490 + Psyr_4793 0.77 -0.2 5,682,490 + Psyr_4793 0.77 -0.6 5,682,527 + Psyr_4793 0.81 -2.5 5,682,527 + Psyr_4793 0.81 +0.0 5,682,622 + +1.2 5,682,642 + +0.2 5,682,642 + -0.3 5,682,642 + -0.9 5,682,642 + +0.2 5,682,642 + -0.9 5,682,642 + +1.1 5,682,642 + -0.1 5,682,646 + -0.2 5,682,646 + -0.9 5,682,646 + +0.4 5,682,646 + -0.1 5,682,646 + +1.5 5,682,646 + +0.4 5,682,646 + +0.0 5,682,646 + +1.1 5,682,646 + +1.0 5,682,646 + -0.8 5,682,652 + +0.0 5,682,652 + -1.9 5,682,652 + -0.1 5,682,652 + -0.3 5,682,652 + -0.1 5,682,652 + +0.3 5,682,652 + -1.1 5,682,652 + +0.8 5,682,652 + -1.8 5,682,652 + +0.1 5,682,656 + -0.1 5,682,656 + -0.1 5,682,656 + +1.9 5,683,928 + -0.1 5,684,069 + -2.4 5,684,139 + Psyr_4795 0.20 -0.1 5,684,139 + Psyr_4795 0.20 +0.3 5,684,139 + Psyr_4795 0.20 +1.7 5,684,139 + Psyr_4795 0.20 +0.4 5,684,139 + Psyr_4795 0.20 +0.8 5,684,139 + Psyr_4795 0.20 +0.5 5,684,139 + Psyr_4795 0.20 -0.2 5,684,139 + Psyr_4795 0.20 -1.5 5,684,140 - Psyr_4795 0.21 +0.2 5,684,140 - Psyr_4795 0.21 +0.7 5,684,140 - Psyr_4795 0.21 -1.2 5,684,140 - Psyr_4795 0.21 +0.9 5,684,140 - Psyr_4795 0.21 -0.4 5,684,140 - Psyr_4795 0.21 -0.9 5,684,140 - Psyr_4795 0.21 +0.4 5,684,270 - Psyr_4795 0.42 -1.3 5,684,363 + Psyr_4795 0.57 +0.0 5,684,363 + Psyr_4795 0.57 -0.1 5,684,364 - Psyr_4795 0.57 +0.9 5,684,364 - Psyr_4795 0.57 +0.9 5,684,364 - Psyr_4795 0.57 +0.2 5,684,379 + Psyr_4795 0.59 +1.1 5,684,379 + Psyr_4795 0.59 +0.4 5,684,388 + Psyr_4795 0.61 -2.1 5,684,389 - Psyr_4795 0.61 -0.1 5,684,389 - Psyr_4795 0.61 -0.1 5,684,434 + Psyr_4795 0.68 -2.2 5,684,434 + Psyr_4795 0.68 +0.6 5,684,434 + Psyr_4795 0.68 +0.7 5,684,434 + Psyr_4795 0.68 -0.2 5,684,434 + Psyr_4795 0.68 -0.1 5,684,434 + Psyr_4795 0.68 +0.2 5,684,434 + Psyr_4795 0.68 -0.6 5,684,434 + Psyr_4795 0.68 -0.2 5,684,435 - Psyr_4795 0.68 +0.9 5,684,435 - Psyr_4795 0.68 +0.9 5,684,435 - Psyr_4795 0.68 -0.2 5,684,435 - Psyr_4795 0.68 +0.1 5,684,435 - Psyr_4795 0.68 +0.3 5,684,435 - Psyr_4795 0.68 -1.0 5,684,435 - Psyr_4795 0.68 +0.1 5,684,545 + Psyr_4795 0.86 +0.3 5,684,609 + +0.4 5,684,609 + -0.9 5,684,609 + -0.1 5,684,660 + -1.2 5,684,661 - +0.7 5,684,661 - +1.5 5,684,680 - +1.5
Or see this region's nucleotide sequence